Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08300

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08290 and AO353_08295 are separated by 183 nucleotidesAO353_08295 and AO353_08300 are separated by 64 nucleotidesAO353_08300 and AO353_08305 are separated by 115 nucleotidesAO353_08305 and AO353_08310 are separated by 124 nucleotides AO353_08290: AO353_08290 - coniferyl aldehyde dehydrogenase, at 1,821,677 to 1,823,107 _08290 AO353_08295: AO353_08295 - twin-arginine translocation pathway signal protein, at 1,823,291 to 1,823,836 _08295 AO353_08300: AO353_08300 - GMC family oxidoreductase, at 1,823,901 to 1,825,496 _08300 AO353_08305: AO353_08305 - phosphopantetheine adenylyltransferase, at 1,825,612 to 1,826,091 _08305 AO353_08310: AO353_08310 - ferredoxin, at 1,826,216 to 1,826,467 _08310 Position (kb) 1823 1824 1825 1826Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15at 1822.967 kb on + strandat 1823.051 kb on + strandat 1823.051 kb on + strandat 1823.051 kb on + strandat 1823.051 kb on + strandat 1823.052 kb on - strandat 1823.052 kb on - strandat 1823.112 kb on + strandat 1823.113 kb on - strandat 1823.120 kb on - strandat 1823.120 kb on - strandat 1823.120 kb on - strandat 1823.120 kb on - strandat 1823.120 kb on - strandat 1823.120 kb on - strandat 1823.120 kb on - strandat 1823.120 kb on - strandat 1823.120 kb on - strandat 1823.122 kb on - strandat 1823.122 kb on - strandat 1823.260 kb on + strandat 1823.283 kb on + strandat 1823.283 kb on + strandat 1823.283 kb on + strandat 1823.283 kb on + strandat 1823.284 kb on - strandat 1823.289 kb on + strandat 1823.289 kb on + strandat 1823.289 kb on + strandat 1823.289 kb on + strandat 1823.289 kb on + strandat 1823.289 kb on + strandat 1823.289 kb on + strandat 1823.289 kb on + strandat 1823.290 kb on - strandat 1823.290 kb on - strandat 1823.290 kb on - strandat 1823.290 kb on - strandat 1823.290 kb on - strandat 1823.290 kb on - strandat 1823.290 kb on - strandat 1823.626 kb on + strand, within AO353_08295at 1823.626 kb on + strand, within AO353_08295at 1823.626 kb on + strand, within AO353_08295at 1823.627 kb on - strand, within AO353_08295at 1823.627 kb on - strand, within AO353_08295at 1823.627 kb on - strand, within AO353_08295at 1823.627 kb on - strand, within AO353_08295at 1823.780 kb on + strand, within AO353_08295at 1823.780 kb on + strand, within AO353_08295at 1823.780 kb on + strand, within AO353_08295at 1823.780 kb on + strand, within AO353_08295at 1823.780 kb on + strand, within AO353_08295at 1823.780 kb on + strand, within AO353_08295at 1823.780 kb on + strand, within AO353_08295at 1823.781 kb on - strand, within AO353_08295at 1823.781 kb on - strand, within AO353_08295at 1823.781 kb on - strand, within AO353_08295at 1823.781 kb on - strand, within AO353_08295at 1823.834 kb on + strandat 1823.886 kb on + strandat 1823.886 kb on + strandat 1823.886 kb on + strandat 1823.886 kb on + strandat 1823.886 kb on + strandat 1823.886 kb on + strandat 1823.887 kb on - strandat 1823.887 kb on - strandat 1823.887 kb on - strandat 1823.887 kb on - strandat 1823.887 kb on - strandat 1823.887 kb on - strandat 1823.887 kb on - strandat 1823.887 kb on - strandat 1823.887 kb on - strandat 1823.887 kb on - strandat 1823.887 kb on - strandat 1823.952 kb on + strandat 1823.952 kb on + strandat 1823.953 kb on - strandat 1823.953 kb on - strandat 1823.953 kb on - strandat 1824.060 kb on + strandat 1824.132 kb on + strand, within AO353_08300at 1824.132 kb on + strand, within AO353_08300at 1824.133 kb on - strand, within AO353_08300at 1824.133 kb on - strand, within AO353_08300at 1824.564 kb on + strand, within AO353_08300at 1824.564 kb on + strand, within AO353_08300at 1824.565 kb on - strand, within AO353_08300at 1824.663 kb on - strand, within AO353_08300at 1824.663 kb on - strand, within AO353_08300at 1824.687 kb on + strand, within AO353_08300at 1824.687 kb on + strand, within AO353_08300at 1824.687 kb on + strand, within AO353_08300at 1824.688 kb on - strand, within AO353_08300at 1824.688 kb on - strand, within AO353_08300at 1824.688 kb on - strand, within AO353_08300at 1824.688 kb on - strand, within AO353_08300at 1824.688 kb on - strand, within AO353_08300at 1824.688 kb on - strand, within AO353_08300at 1824.688 kb on - strand, within AO353_08300at 1824.688 kb on - strand, within AO353_08300at 1824.688 kb on - strand, within AO353_08300at 1824.691 kb on + strand, within AO353_08300at 1824.691 kb on + strand, within AO353_08300at 1824.691 kb on + strand, within AO353_08300at 1824.691 kb on + strand, within AO353_08300at 1824.691 kb on + strand, within AO353_08300at 1824.691 kb on + strand, within AO353_08300at 1824.691 kb on + strand, within AO353_08300at 1824.692 kb on - strand, within AO353_08300at 1824.692 kb on - strand, within AO353_08300at 1824.692 kb on - strand, within AO353_08300at 1824.692 kb on - strand, within AO353_08300at 1824.692 kb on - strand, within AO353_08300at 1824.692 kb on - strand, within AO353_08300at 1824.692 kb on - strand, within AO353_08300at 1824.692 kb on - strand, within AO353_08300at 1824.692 kb on - strand, within AO353_08300at 1824.834 kb on + strand, within AO353_08300at 1824.835 kb on - strand, within AO353_08300at 1824.835 kb on - strand, within AO353_08300at 1824.855 kb on + strand, within AO353_08300at 1824.855 kb on + strand, within AO353_08300at 1824.855 kb on + strand, within AO353_08300at 1824.855 kb on + strand, within AO353_08300at 1824.855 kb on + strand, within AO353_08300at 1824.855 kb on - strand, within AO353_08300at 1824.856 kb on - strand, within AO353_08300at 1824.903 kb on + strand, within AO353_08300at 1824.903 kb on + strand, within AO353_08300at 1824.904 kb on - strand, within AO353_08300at 1824.904 kb on - strand, within AO353_08300at 1825.069 kb on + strand, within AO353_08300at 1825.098 kb on + strand, within AO353_08300at 1825.099 kb on - strand, within AO353_08300at 1825.099 kb on - strand, within AO353_08300at 1825.113 kb on + strand, within AO353_08300at 1825.113 kb on + strand, within AO353_08300at 1825.113 kb on + strand, within AO353_08300at 1825.113 kb on + strand, within AO353_08300at 1825.113 kb on + strand, within AO353_08300at 1825.113 kb on + strand, within AO353_08300at 1825.113 kb on + strand, within AO353_08300at 1825.113 kb on + strand, within AO353_08300at 1825.114 kb on - strand, within AO353_08300at 1825.114 kb on - strand, within AO353_08300at 1825.114 kb on - strand, within AO353_08300at 1825.114 kb on - strand, within AO353_08300at 1825.114 kb on - strand, within AO353_08300at 1825.129 kb on + strand, within AO353_08300at 1825.129 kb on + strand, within AO353_08300at 1825.129 kb on + strand, within AO353_08300at 1825.129 kb on + strand, within AO353_08300at 1825.129 kb on + strand, within AO353_08300at 1825.129 kb on + strand, within AO353_08300at 1825.129 kb on + strand, within AO353_08300at 1825.130 kb on - strand, within AO353_08300at 1825.130 kb on - strand, within AO353_08300at 1825.130 kb on - strand, within AO353_08300at 1825.130 kb on - strand, within AO353_08300at 1825.130 kb on - strand, within AO353_08300at 1825.130 kb on - strand, within AO353_08300at 1825.130 kb on - strand, within AO353_08300at 1825.130 kb on - strand, within AO353_08300at 1825.130 kb on - strand, within AO353_08300at 1825.270 kb on - strand, within AO353_08300at 1825.373 kb on + strandat 1825.373 kb on + strandat 1825.373 kb on + strandat 1825.373 kb on + strandat 1825.374 kb on - strandat 1825.374 kb on - strandat 1825.374 kb on - strandat 1825.374 kb on - strandat 1825.374 kb on - strandat 1825.374 kb on - strandat 1825.374 kb on - strandat 1825.374 kb on - strandat 1825.440 kb on + strandat 1825.440 kb on + strandat 1825.441 kb on - strandat 1825.441 kb on - strandat 1825.506 kb on + strandat 1825.507 kb on - strandat 1825.507 kb on - strandat 1825.520 kb on + strandat 1825.520 kb on + strandat 1825.520 kb on + strandat 1825.520 kb on + strandat 1825.520 kb on + strandat 1825.520 kb on + strandat 1825.520 kb on + strandat 1825.520 kb on + strandat 1825.520 kb on + strandat 1825.520 kb on + strandat 1825.520 kb on + strandat 1825.521 kb on - strandat 1825.521 kb on - strandat 1825.521 kb on - strandat 1825.521 kb on - strandat 1825.521 kb on - strandat 1825.521 kb on - strandat 1825.521 kb on - strandat 1825.521 kb on - strandat 1825.522 kb on + strandat 1825.522 kb on + strandat 1825.522 kb on + strandat 1825.522 kb on + strandat 1825.522 kb on + strandat 1825.523 kb on - strandat 1825.523 kb on - strandat 1825.534 kb on - strandat 1826.089 kb on + strandat 1826.089 kb on + strandat 1826.089 kb on + strandat 1826.090 kb on - strandat 1826.090 kb on - strandat 1826.090 kb on - strandat 1826.090 kb on - strandat 1826.090 kb on - strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.110 kb on - strandat 1826.110 kb on - strandat 1826.110 kb on - strandat 1826.166 kb on + strandat 1826.441 kb on + strand, within AO353_08310at 1826.441 kb on + strand, within AO353_08310at 1826.453 kb on - strandat 1826.469 kb on + strandat 1826.469 kb on + strandat 1826.470 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,822,967 + -0.3
1,823,051 + -0.7
1,823,051 + -1.0
1,823,051 + -0.2
1,823,051 + +0.2
1,823,052 - -0.8
1,823,052 - +1.7
1,823,112 + -0.6
1,823,113 - -1.0
1,823,120 - +0.1
1,823,120 - -0.1
1,823,120 - +1.4
1,823,120 - -0.3
1,823,120 - -0.1
1,823,120 - +0.9
1,823,120 - -2.2
1,823,120 - +0.9
1,823,120 - +0.5
1,823,122 - -0.1
1,823,122 - -0.5
1,823,260 + +1.0
1,823,283 + -0.5
1,823,283 + +1.1
1,823,283 + -0.9
1,823,283 + -1.5
1,823,284 - -1.6
1,823,289 + +0.2
1,823,289 + +0.1
1,823,289 + +0.1
1,823,289 + -0.9
1,823,289 + -0.5
1,823,289 + +2.2
1,823,289 + +0.6
1,823,289 + -1.7
1,823,290 - -0.3
1,823,290 - -0.9
1,823,290 - -1.6
1,823,290 - +0.9
1,823,290 - +1.6
1,823,290 - -0.3
1,823,290 - +1.1
1,823,626 + AO353_08295 0.61 -0.9
1,823,626 + AO353_08295 0.61 +1.7
1,823,626 + AO353_08295 0.61 -0.5
1,823,627 - AO353_08295 0.62 +0.3
1,823,627 - AO353_08295 0.62 +0.9
1,823,627 - AO353_08295 0.62 -0.8
1,823,627 - AO353_08295 0.62 +1.2
1,823,780 + AO353_08295 0.90 +0.5
1,823,780 + AO353_08295 0.90 -0.8
1,823,780 + AO353_08295 0.90 +1.1
1,823,780 + AO353_08295 0.90 -0.5
1,823,780 + AO353_08295 0.90 -0.2
1,823,780 + AO353_08295 0.90 -1.3
1,823,780 + AO353_08295 0.90 +1.5
1,823,781 - AO353_08295 0.90 +0.6
1,823,781 - AO353_08295 0.90 +0.1
1,823,781 - AO353_08295 0.90 +0.0
1,823,781 - AO353_08295 0.90 -0.8
1,823,834 + -0.2
1,823,886 + -2.0
1,823,886 + -0.9
1,823,886 + +0.1
1,823,886 + +0.7
1,823,886 + -1.3
1,823,886 + -0.5
1,823,887 - +0.9
1,823,887 - +1.4
1,823,887 - +0.2
1,823,887 - +0.8
1,823,887 - +0.7
1,823,887 - -0.1
1,823,887 - -1.1
1,823,887 - +2.1
1,823,887 - +1.0
1,823,887 - +0.4
1,823,887 - -2.1
1,823,952 + +0.5
1,823,952 + -1.8
1,823,953 - -2.7
1,823,953 - -0.9
1,823,953 - +0.4
1,824,060 + -0.1
1,824,132 + AO353_08300 0.14 -0.4
1,824,132 + AO353_08300 0.14 +0.5
1,824,133 - AO353_08300 0.15 -0.5
1,824,133 - AO353_08300 0.15 -1.9
1,824,564 + AO353_08300 0.42 +0.4
1,824,564 + AO353_08300 0.42 +1.7
1,824,565 - AO353_08300 0.42 +1.0
1,824,663 - AO353_08300 0.48 -0.1
1,824,663 - AO353_08300 0.48 +0.5
1,824,687 + AO353_08300 0.49 +1.0
1,824,687 + AO353_08300 0.49 -0.9
1,824,687 + AO353_08300 0.49 -0.2
1,824,688 - AO353_08300 0.49 -1.7
1,824,688 - AO353_08300 0.49 -0.6
1,824,688 - AO353_08300 0.49 -0.1
1,824,688 - AO353_08300 0.49 +1.1
1,824,688 - AO353_08300 0.49 -1.2
1,824,688 - AO353_08300 0.49 -0.3
1,824,688 - AO353_08300 0.49 +0.4
1,824,688 - AO353_08300 0.49 +1.4
1,824,688 - AO353_08300 0.49 -0.5
1,824,691 + AO353_08300 0.49 +1.4
1,824,691 + AO353_08300 0.49 +0.3
1,824,691 + AO353_08300 0.49 +3.7
1,824,691 + AO353_08300 0.49 -0.7
1,824,691 + AO353_08300 0.49 +0.5
1,824,691 + AO353_08300 0.49 -0.2
1,824,691 + AO353_08300 0.49 +0.7
1,824,692 - AO353_08300 0.50 +0.2
1,824,692 - AO353_08300 0.50 -1.6
1,824,692 - AO353_08300 0.50 +2.4
1,824,692 - AO353_08300 0.50 -0.3
1,824,692 - AO353_08300 0.50 +15.0
1,824,692 - AO353_08300 0.50 -1.4
1,824,692 - AO353_08300 0.50 -1.1
1,824,692 - AO353_08300 0.50 +1.3
1,824,692 - AO353_08300 0.50 +0.4
1,824,834 + AO353_08300 0.58 +0.7
1,824,835 - AO353_08300 0.59 +1.7
1,824,835 - AO353_08300 0.59 -0.1
1,824,855 + AO353_08300 0.60 -0.6
1,824,855 + AO353_08300 0.60 +0.1
1,824,855 + AO353_08300 0.60 -0.1
1,824,855 + AO353_08300 0.60 +0.2
1,824,855 + AO353_08300 0.60 +0.7
1,824,855 - AO353_08300 0.60 -0.8
1,824,856 - AO353_08300 0.60 -1.4
1,824,903 + AO353_08300 0.63 +0.7
1,824,903 + AO353_08300 0.63 -0.5
1,824,904 - AO353_08300 0.63 +0.7
1,824,904 - AO353_08300 0.63 -1.0
1,825,069 + AO353_08300 0.73 +1.5
1,825,098 + AO353_08300 0.75 +0.2
1,825,099 - AO353_08300 0.75 +0.9
1,825,099 - AO353_08300 0.75 +1.3
1,825,113 + AO353_08300 0.76 +0.7
1,825,113 + AO353_08300 0.76 +0.4
1,825,113 + AO353_08300 0.76 +1.0
1,825,113 + AO353_08300 0.76 +2.3
1,825,113 + AO353_08300 0.76 +1.0
1,825,113 + AO353_08300 0.76 -0.1
1,825,113 + AO353_08300 0.76 -0.3
1,825,113 + AO353_08300 0.76 +0.0
1,825,114 - AO353_08300 0.76 +1.4
1,825,114 - AO353_08300 0.76 -0.1
1,825,114 - AO353_08300 0.76 +0.7
1,825,114 - AO353_08300 0.76 +1.3
1,825,114 - AO353_08300 0.76 +2.7
1,825,129 + AO353_08300 0.77 +0.9
1,825,129 + AO353_08300 0.77 -1.1
1,825,129 + AO353_08300 0.77 -0.3
1,825,129 + AO353_08300 0.77 +1.5
1,825,129 + AO353_08300 0.77 -1.5
1,825,129 + AO353_08300 0.77 -0.6
1,825,129 + AO353_08300 0.77 -0.8
1,825,130 - AO353_08300 0.77 +0.7
1,825,130 - AO353_08300 0.77 +1.0
1,825,130 - AO353_08300 0.77 -2.5
1,825,130 - AO353_08300 0.77 +1.1
1,825,130 - AO353_08300 0.77 -0.6
1,825,130 - AO353_08300 0.77 -0.5
1,825,130 - AO353_08300 0.77 -1.4
1,825,130 - AO353_08300 0.77 -1.8
1,825,130 - AO353_08300 0.77 +0.0
1,825,270 - AO353_08300 0.86 +0.1
1,825,373 + -0.5
1,825,373 + +0.7
1,825,373 + -0.8
1,825,373 + -0.3
1,825,374 - -1.9
1,825,374 - +2.1
1,825,374 - +0.7
1,825,374 - +0.1
1,825,374 - -0.4
1,825,374 - +0.4
1,825,374 - -1.0
1,825,374 - +0.1
1,825,440 + +0.1
1,825,440 + +0.6
1,825,441 - -0.1
1,825,441 - +0.9
1,825,506 + -1.6
1,825,507 - +1.7
1,825,507 - +0.4
1,825,520 + +0.4
1,825,520 + +1.9
1,825,520 + -1.4
1,825,520 + -0.1
1,825,520 + -0.3
1,825,520 + +0.5
1,825,520 + -1.8
1,825,520 + +0.4
1,825,520 + +1.3
1,825,520 + -0.5
1,825,520 + +1.1
1,825,521 - +0.9
1,825,521 - -0.5
1,825,521 - +1.4
1,825,521 - -0.7
1,825,521 - -0.0
1,825,521 - -0.5
1,825,521 - -0.8
1,825,521 - +1.5
1,825,522 + -1.0
1,825,522 + +1.2
1,825,522 + -0.3
1,825,522 + -1.0
1,825,522 + +0.2
1,825,523 - -0.1
1,825,523 - +0.3
1,825,534 - -0.1
1,826,089 + -0.9
1,826,089 + -0.0
1,826,089 + -0.2
1,826,090 - +0.3
1,826,090 - +0.1
1,826,090 - +1.2
1,826,090 - +0.7
1,826,090 - +0.4
1,826,109 + -0.0
1,826,109 + +0.7
1,826,109 + +1.1
1,826,109 + -2.3
1,826,109 + -1.6
1,826,109 + -0.1
1,826,109 + -0.0
1,826,109 + -0.1
1,826,109 + +2.0
1,826,110 - +0.5
1,826,110 - +0.4
1,826,110 - +1.7
1,826,166 + +0.7
1,826,441 + AO353_08310 0.89 +1.1
1,826,441 + AO353_08310 0.89 +2.7
1,826,453 - -0.2
1,826,469 + -0.8
1,826,469 + -0.3
1,826,470 - +0.1

Or see this region's nucleotide sequence