Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07200 and AO353_07205 overlap by 4 nucleotides AO353_07205 and AO353_07210 are separated by 67 nucleotides AO353_07210 and AO353_07215 overlap by 4 nucleotides
AO353_07200: AO353_07200 - cyclic AMP receptor protein, at 1,579,919 to 1,580,563
_07200
AO353_07205: AO353_07205 - lipoate--protein ligase, at 1,580,560 to 1,581,261
_07205
AO353_07210: AO353_07210 - indole-3-glycerol-phosphate synthase, at 1,581,329 to 1,582,165
_07210
AO353_07215: AO353_07215 - anthranilate phosphoribosyltransferase, at 1,582,162 to 1,583,211
_07215
Position (kb)
1581
1582
1583 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1580.594 kb on + strand at 1580.594 kb on + strand at 1580.595 kb on - strand at 1580.595 kb on - strand at 1580.990 kb on + strand, within AO353_07205 at 1580.990 kb on + strand, within AO353_07205 at 1580.990 kb on + strand, within AO353_07205 at 1580.990 kb on + strand, within AO353_07205 at 1580.990 kb on + strand, within AO353_07205 at 1580.990 kb on + strand, within AO353_07205 at 1580.990 kb on + strand, within AO353_07205 at 1580.990 kb on + strand, within AO353_07205 at 1580.990 kb on + strand, within AO353_07205 at 1580.990 kb on + strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1580.991 kb on - strand, within AO353_07205 at 1581.004 kb on - strand, within AO353_07205 at 1581.249 kb on + strand at 1581.249 kb on + strand at 1581.249 kb on + strand at 1581.249 kb on + strand at 1581.250 kb on - strand at 1581.250 kb on - strand at 1581.250 kb on - strand at 1581.250 kb on - strand at 1581.288 kb on - strand at 1581.340 kb on + strand at 1581.340 kb on + strand at 1581.340 kb on + strand at 1581.340 kb on + strand at 1581.341 kb on - strand at 1581.341 kb on - strand at 1581.341 kb on - strand at 1581.341 kb on - strand at 1581.441 kb on + strand, within AO353_07210 at 1581.441 kb on + strand, within AO353_07210 at 1581.441 kb on + strand, within AO353_07210 at 1581.441 kb on + strand, within AO353_07210 at 1581.441 kb on + strand, within AO353_07210 at 1581.442 kb on - strand, within AO353_07210 at 1581.442 kb on - strand, within AO353_07210 at 1581.500 kb on - strand, within AO353_07210 at 1581.604 kb on + strand, within AO353_07210 at 1581.843 kb on + strand, within AO353_07210 at 1581.843 kb on + strand, within AO353_07210 at 1581.843 kb on + strand, within AO353_07210 at 1581.844 kb on - strand, within AO353_07210 at 1581.844 kb on - strand, within AO353_07210 at 1581.844 kb on - strand, within AO353_07210 at 1581.844 kb on - strand, within AO353_07210 at 1581.844 kb on - strand, within AO353_07210 at 1581.912 kb on + strand, within AO353_07210 at 1581.912 kb on + strand, within AO353_07210 at 1582.145 kb on + strand at 1582.158 kb on - strand at 1582.158 kb on - strand at 1582.158 kb on - strand at 1582.298 kb on + strand, within AO353_07215 at 1582.298 kb on + strand, within AO353_07215 at 1582.299 kb on - strand, within AO353_07215 at 1582.299 kb on - strand, within AO353_07215 at 1582.299 kb on - strand, within AO353_07215 at 1582.299 kb on - strand, within AO353_07215 at 1582.299 kb on - strand, within AO353_07215 at 1582.469 kb on + strand, within AO353_07215 at 1582.470 kb on - strand, within AO353_07215 at 1582.689 kb on + strand, within AO353_07215 at 1582.689 kb on + strand, within AO353_07215 at 1582.689 kb on + strand, within AO353_07215 at 1582.689 kb on + strand, within AO353_07215 at 1582.689 kb on + strand, within AO353_07215 at 1582.689 kb on + strand, within AO353_07215 at 1582.689 kb on + strand, within AO353_07215 at 1582.690 kb on - strand, within AO353_07215 at 1582.690 kb on - strand, within AO353_07215 at 1582.690 kb on - strand, within AO353_07215 at 1582.690 kb on - strand, within AO353_07215 at 1582.690 kb on - strand, within AO353_07215 at 1582.690 kb on - strand, within AO353_07215 at 1582.690 kb on - strand, within AO353_07215 at 1582.690 kb on - strand, within AO353_07215 at 1582.690 kb on - strand, within AO353_07215 at 1582.690 kb on - strand, within AO353_07215 at 1582.690 kb on - strand, within AO353_07215 at 1582.690 kb on - strand, within AO353_07215 at 1582.817 kb on + strand, within AO353_07215 at 1582.817 kb on + strand, within AO353_07215 at 1582.817 kb on + strand, within AO353_07215 at 1582.817 kb on + strand, within AO353_07215 at 1582.818 kb on - strand, within AO353_07215 at 1582.818 kb on - strand, within AO353_07215 at 1582.818 kb on - strand, within AO353_07215 at 1582.972 kb on + strand, within AO353_07215 at 1582.972 kb on + strand, within AO353_07215 at 1582.972 kb on + strand, within AO353_07215 at 1582.972 kb on + strand, within AO353_07215
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 1,580,594 + +0.5 1,580,594 + +0.9 1,580,595 - +2.6 1,580,595 - -0.0 1,580,990 + AO353_07205 0.61 -0.5 1,580,990 + AO353_07205 0.61 -1.8 1,580,990 + AO353_07205 0.61 +0.6 1,580,990 + AO353_07205 0.61 -1.0 1,580,990 + AO353_07205 0.61 -1.0 1,580,990 + AO353_07205 0.61 -1.3 1,580,990 + AO353_07205 0.61 -0.3 1,580,990 + AO353_07205 0.61 +1.0 1,580,990 + AO353_07205 0.61 +1.1 1,580,990 + AO353_07205 0.61 -0.5 1,580,991 - AO353_07205 0.61 -0.3 1,580,991 - AO353_07205 0.61 -1.5 1,580,991 - AO353_07205 0.61 -0.3 1,580,991 - AO353_07205 0.61 +1.8 1,580,991 - AO353_07205 0.61 +0.8 1,580,991 - AO353_07205 0.61 -0.1 1,580,991 - AO353_07205 0.61 +0.4 1,580,991 - AO353_07205 0.61 +0.1 1,580,991 - AO353_07205 0.61 -0.2 1,580,991 - AO353_07205 0.61 +0.2 1,580,991 - AO353_07205 0.61 +0.4 1,580,991 - AO353_07205 0.61 -0.5 1,580,991 - AO353_07205 0.61 +0.7 1,581,004 - AO353_07205 0.63 +2.2 1,581,249 + +0.0 1,581,249 + +0.1 1,581,249 + -0.3 1,581,249 + +0.2 1,581,250 - -0.8 1,581,250 - +1.2 1,581,250 - -0.6 1,581,250 - -0.9 1,581,288 - +1.5 1,581,340 + -0.3 1,581,340 + -0.0 1,581,340 + +0.5 1,581,340 + +0.1 1,581,341 - +1.0 1,581,341 - -1.8 1,581,341 - +0.0 1,581,341 - -0.9 1,581,441 + AO353_07210 0.13 +0.2 1,581,441 + AO353_07210 0.13 -1.7 1,581,441 + AO353_07210 0.13 -0.5 1,581,441 + AO353_07210 0.13 -2.8 1,581,441 + AO353_07210 0.13 -0.5 1,581,442 - AO353_07210 0.14 -0.0 1,581,442 - AO353_07210 0.14 -0.5 1,581,500 - AO353_07210 0.20 +0.2 1,581,604 + AO353_07210 0.33 -1.3 1,581,843 + AO353_07210 0.61 -0.6 1,581,843 + AO353_07210 0.61 -2.0 1,581,843 + AO353_07210 0.61 -1.3 1,581,844 - AO353_07210 0.62 -1.6 1,581,844 - AO353_07210 0.62 -2.1 1,581,844 - AO353_07210 0.62 -0.3 1,581,844 - AO353_07210 0.62 -2.0 1,581,844 - AO353_07210 0.62 -1.6 1,581,912 + AO353_07210 0.70 -1.6 1,581,912 + AO353_07210 0.70 -0.6 1,582,145 + -0.9 1,582,158 - -1.3 1,582,158 - +2.5 1,582,158 - -2.0 1,582,298 + AO353_07215 0.13 +1.5 1,582,298 + AO353_07215 0.13 -0.6 1,582,299 - AO353_07215 0.13 +1.0 1,582,299 - AO353_07215 0.13 +0.5 1,582,299 - AO353_07215 0.13 -0.0 1,582,299 - AO353_07215 0.13 +0.2 1,582,299 - AO353_07215 0.13 +0.2 1,582,469 + AO353_07215 0.29 -2.3 1,582,470 - AO353_07215 0.29 -0.8 1,582,689 + AO353_07215 0.50 -1.6 1,582,689 + AO353_07215 0.50 -1.0 1,582,689 + AO353_07215 0.50 -2.2 1,582,689 + AO353_07215 0.50 -1.1 1,582,689 + AO353_07215 0.50 -0.9 1,582,689 + AO353_07215 0.50 -1.6 1,582,689 + AO353_07215 0.50 -2.2 1,582,690 - AO353_07215 0.50 -2.1 1,582,690 - AO353_07215 0.50 -0.9 1,582,690 - AO353_07215 0.50 -0.6 1,582,690 - AO353_07215 0.50 -0.9 1,582,690 - AO353_07215 0.50 -0.9 1,582,690 - AO353_07215 0.50 -0.5 1,582,690 - AO353_07215 0.50 +0.5 1,582,690 - AO353_07215 0.50 +0.3 1,582,690 - AO353_07215 0.50 -2.1 1,582,690 - AO353_07215 0.50 -1.2 1,582,690 - AO353_07215 0.50 -0.5 1,582,690 - AO353_07215 0.50 -0.0 1,582,817 + AO353_07215 0.62 -2.3 1,582,817 + AO353_07215 0.62 -0.5 1,582,817 + AO353_07215 0.62 -0.9 1,582,817 + AO353_07215 0.62 +0.2 1,582,818 - AO353_07215 0.62 +1.5 1,582,818 - AO353_07215 0.62 -0.9 1,582,818 - AO353_07215 0.62 +1.5 1,582,972 + AO353_07215 0.77 -1.3 1,582,972 + AO353_07215 0.77 +1.0 1,582,972 + AO353_07215 0.77 -0.6 1,582,972 + AO353_07215 0.77 -0.8
Or see this region's nucleotide sequence