Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07210

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07200 and AO353_07205 overlap by 4 nucleotidesAO353_07205 and AO353_07210 are separated by 67 nucleotidesAO353_07210 and AO353_07215 overlap by 4 nucleotides AO353_07200: AO353_07200 - cyclic AMP receptor protein, at 1,579,919 to 1,580,563 _07200 AO353_07205: AO353_07205 - lipoate--protein ligase, at 1,580,560 to 1,581,261 _07205 AO353_07210: AO353_07210 - indole-3-glycerol-phosphate synthase, at 1,581,329 to 1,582,165 _07210 AO353_07215: AO353_07215 - anthranilate phosphoribosyltransferase, at 1,582,162 to 1,583,211 _07215 Position (kb) 1581 1582 1583Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1580.594 kb on + strandat 1580.594 kb on + strandat 1580.595 kb on - strandat 1580.595 kb on - strandat 1580.990 kb on + strand, within AO353_07205at 1580.990 kb on + strand, within AO353_07205at 1580.990 kb on + strand, within AO353_07205at 1580.990 kb on + strand, within AO353_07205at 1580.990 kb on + strand, within AO353_07205at 1580.990 kb on + strand, within AO353_07205at 1580.990 kb on + strand, within AO353_07205at 1580.990 kb on + strand, within AO353_07205at 1580.990 kb on + strand, within AO353_07205at 1580.990 kb on + strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1580.991 kb on - strand, within AO353_07205at 1581.004 kb on - strand, within AO353_07205at 1581.249 kb on + strandat 1581.249 kb on + strandat 1581.249 kb on + strandat 1581.249 kb on + strandat 1581.250 kb on - strandat 1581.250 kb on - strandat 1581.250 kb on - strandat 1581.250 kb on - strandat 1581.288 kb on - strandat 1581.340 kb on + strandat 1581.340 kb on + strandat 1581.340 kb on + strandat 1581.340 kb on + strandat 1581.341 kb on - strandat 1581.341 kb on - strandat 1581.341 kb on - strandat 1581.341 kb on - strandat 1581.441 kb on + strand, within AO353_07210at 1581.441 kb on + strand, within AO353_07210at 1581.441 kb on + strand, within AO353_07210at 1581.441 kb on + strand, within AO353_07210at 1581.441 kb on + strand, within AO353_07210at 1581.442 kb on - strand, within AO353_07210at 1581.442 kb on - strand, within AO353_07210at 1581.500 kb on - strand, within AO353_07210at 1581.604 kb on + strand, within AO353_07210at 1581.843 kb on + strand, within AO353_07210at 1581.843 kb on + strand, within AO353_07210at 1581.843 kb on + strand, within AO353_07210at 1581.844 kb on - strand, within AO353_07210at 1581.844 kb on - strand, within AO353_07210at 1581.844 kb on - strand, within AO353_07210at 1581.844 kb on - strand, within AO353_07210at 1581.844 kb on - strand, within AO353_07210at 1581.912 kb on + strand, within AO353_07210at 1581.912 kb on + strand, within AO353_07210at 1582.145 kb on + strandat 1582.158 kb on - strandat 1582.158 kb on - strandat 1582.158 kb on - strandat 1582.298 kb on + strand, within AO353_07215at 1582.298 kb on + strand, within AO353_07215at 1582.299 kb on - strand, within AO353_07215at 1582.299 kb on - strand, within AO353_07215at 1582.299 kb on - strand, within AO353_07215at 1582.299 kb on - strand, within AO353_07215at 1582.299 kb on - strand, within AO353_07215at 1582.469 kb on + strand, within AO353_07215at 1582.470 kb on - strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.817 kb on + strand, within AO353_07215at 1582.817 kb on + strand, within AO353_07215at 1582.817 kb on + strand, within AO353_07215at 1582.817 kb on + strand, within AO353_07215at 1582.818 kb on - strand, within AO353_07215at 1582.818 kb on - strand, within AO353_07215at 1582.818 kb on - strand, within AO353_07215at 1582.972 kb on + strand, within AO353_07215at 1582.972 kb on + strand, within AO353_07215at 1582.972 kb on + strand, within AO353_07215at 1582.972 kb on + strand, within AO353_07215

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,580,594 + +0.5
1,580,594 + +0.9
1,580,595 - +2.6
1,580,595 - -0.0
1,580,990 + AO353_07205 0.61 -0.5
1,580,990 + AO353_07205 0.61 -1.8
1,580,990 + AO353_07205 0.61 +0.6
1,580,990 + AO353_07205 0.61 -1.0
1,580,990 + AO353_07205 0.61 -1.0
1,580,990 + AO353_07205 0.61 -1.3
1,580,990 + AO353_07205 0.61 -0.3
1,580,990 + AO353_07205 0.61 +1.0
1,580,990 + AO353_07205 0.61 +1.1
1,580,990 + AO353_07205 0.61 -0.5
1,580,991 - AO353_07205 0.61 -0.3
1,580,991 - AO353_07205 0.61 -1.5
1,580,991 - AO353_07205 0.61 -0.3
1,580,991 - AO353_07205 0.61 +1.8
1,580,991 - AO353_07205 0.61 +0.8
1,580,991 - AO353_07205 0.61 -0.1
1,580,991 - AO353_07205 0.61 +0.4
1,580,991 - AO353_07205 0.61 +0.1
1,580,991 - AO353_07205 0.61 -0.2
1,580,991 - AO353_07205 0.61 +0.2
1,580,991 - AO353_07205 0.61 +0.4
1,580,991 - AO353_07205 0.61 -0.5
1,580,991 - AO353_07205 0.61 +0.7
1,581,004 - AO353_07205 0.63 +2.2
1,581,249 + +0.0
1,581,249 + +0.1
1,581,249 + -0.3
1,581,249 + +0.2
1,581,250 - -0.8
1,581,250 - +1.2
1,581,250 - -0.6
1,581,250 - -0.9
1,581,288 - +1.5
1,581,340 + -0.3
1,581,340 + -0.0
1,581,340 + +0.5
1,581,340 + +0.1
1,581,341 - +1.0
1,581,341 - -1.8
1,581,341 - +0.0
1,581,341 - -0.9
1,581,441 + AO353_07210 0.13 +0.2
1,581,441 + AO353_07210 0.13 -1.7
1,581,441 + AO353_07210 0.13 -0.5
1,581,441 + AO353_07210 0.13 -2.8
1,581,441 + AO353_07210 0.13 -0.5
1,581,442 - AO353_07210 0.14 -0.0
1,581,442 - AO353_07210 0.14 -0.5
1,581,500 - AO353_07210 0.20 +0.2
1,581,604 + AO353_07210 0.33 -1.3
1,581,843 + AO353_07210 0.61 -0.6
1,581,843 + AO353_07210 0.61 -2.0
1,581,843 + AO353_07210 0.61 -1.3
1,581,844 - AO353_07210 0.62 -1.6
1,581,844 - AO353_07210 0.62 -2.1
1,581,844 - AO353_07210 0.62 -0.3
1,581,844 - AO353_07210 0.62 -2.0
1,581,844 - AO353_07210 0.62 -1.6
1,581,912 + AO353_07210 0.70 -1.6
1,581,912 + AO353_07210 0.70 -0.6
1,582,145 + -0.9
1,582,158 - -1.3
1,582,158 - +2.5
1,582,158 - -2.0
1,582,298 + AO353_07215 0.13 +1.5
1,582,298 + AO353_07215 0.13 -0.6
1,582,299 - AO353_07215 0.13 +1.0
1,582,299 - AO353_07215 0.13 +0.5
1,582,299 - AO353_07215 0.13 -0.0
1,582,299 - AO353_07215 0.13 +0.2
1,582,299 - AO353_07215 0.13 +0.2
1,582,469 + AO353_07215 0.29 -2.3
1,582,470 - AO353_07215 0.29 -0.8
1,582,689 + AO353_07215 0.50 -1.6
1,582,689 + AO353_07215 0.50 -1.0
1,582,689 + AO353_07215 0.50 -2.2
1,582,689 + AO353_07215 0.50 -1.1
1,582,689 + AO353_07215 0.50 -0.9
1,582,689 + AO353_07215 0.50 -1.6
1,582,689 + AO353_07215 0.50 -2.2
1,582,690 - AO353_07215 0.50 -2.1
1,582,690 - AO353_07215 0.50 -0.9
1,582,690 - AO353_07215 0.50 -0.6
1,582,690 - AO353_07215 0.50 -0.9
1,582,690 - AO353_07215 0.50 -0.9
1,582,690 - AO353_07215 0.50 -0.5
1,582,690 - AO353_07215 0.50 +0.5
1,582,690 - AO353_07215 0.50 +0.3
1,582,690 - AO353_07215 0.50 -2.1
1,582,690 - AO353_07215 0.50 -1.2
1,582,690 - AO353_07215 0.50 -0.5
1,582,690 - AO353_07215 0.50 -0.0
1,582,817 + AO353_07215 0.62 -2.3
1,582,817 + AO353_07215 0.62 -0.5
1,582,817 + AO353_07215 0.62 -0.9
1,582,817 + AO353_07215 0.62 +0.2
1,582,818 - AO353_07215 0.62 +1.5
1,582,818 - AO353_07215 0.62 -0.9
1,582,818 - AO353_07215 0.62 +1.5
1,582,972 + AO353_07215 0.77 -1.3
1,582,972 + AO353_07215 0.77 +1.0
1,582,972 + AO353_07215 0.77 -0.6
1,582,972 + AO353_07215 0.77 -0.8

Or see this region's nucleotide sequence