Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06205

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06200 and AO353_06205 are separated by 6 nucleotidesAO353_06205 and AO353_06210 are separated by 112 nucleotidesAO353_06210 and AO353_06215 are separated by 2 nucleotides AO353_06200: AO353_06200 - chemotaxis protein, at 1,382,687 to 1,384,309 _06200 AO353_06205: AO353_06205 - hypothetical protein, at 1,384,316 to 1,385,197 _06205 AO353_06210: AO353_06210 - xylose isomerase, at 1,385,310 to 1,386,125 _06210 AO353_06215: AO353_06215 - oxidoreductase, at 1,386,128 to 1,387,183 _06215 Position (kb) 1384 1385 1386Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1383.487 kb on + strand, within AO353_06200at 1383.487 kb on + strand, within AO353_06200at 1383.487 kb on + strand, within AO353_06200at 1383.488 kb on - strand, within AO353_06200at 1383.488 kb on - strand, within AO353_06200at 1383.488 kb on - strand, within AO353_06200at 1383.488 kb on - strand, within AO353_06200at 1383.493 kb on + strand, within AO353_06200at 1383.804 kb on + strand, within AO353_06200at 1383.804 kb on + strand, within AO353_06200at 1383.804 kb on + strand, within AO353_06200at 1383.805 kb on - strand, within AO353_06200at 1384.528 kb on + strand, within AO353_06205at 1384.528 kb on + strand, within AO353_06205at 1384.617 kb on - strand, within AO353_06205at 1384.683 kb on + strand, within AO353_06205at 1384.683 kb on + strand, within AO353_06205at 1384.683 kb on + strand, within AO353_06205at 1384.684 kb on - strand, within AO353_06205at 1384.684 kb on - strand, within AO353_06205at 1384.684 kb on - strand, within AO353_06205at 1384.774 kb on + strand, within AO353_06205at 1385.043 kb on + strand, within AO353_06205at 1385.043 kb on + strand, within AO353_06205at 1385.043 kb on + strand, within AO353_06205at 1385.044 kb on - strand, within AO353_06205at 1385.074 kb on - strand, within AO353_06205at 1385.074 kb on - strand, within AO353_06205at 1385.088 kb on + strand, within AO353_06205at 1385.088 kb on + strand, within AO353_06205at 1385.088 kb on + strand, within AO353_06205at 1385.088 kb on + strand, within AO353_06205at 1385.088 kb on + strand, within AO353_06205at 1385.088 kb on + strand, within AO353_06205at 1385.089 kb on - strand, within AO353_06205at 1385.089 kb on - strand, within AO353_06205at 1385.089 kb on - strand, within AO353_06205at 1385.089 kb on - strand, within AO353_06205at 1385.089 kb on - strand, within AO353_06205at 1385.189 kb on + strandat 1385.252 kb on + strandat 1385.252 kb on + strandat 1385.273 kb on - strandat 1385.446 kb on - strand, within AO353_06210at 1385.651 kb on - strand, within AO353_06210at 1385.651 kb on - strand, within AO353_06210at 1385.675 kb on + strand, within AO353_06210at 1385.675 kb on + strand, within AO353_06210at 1385.675 kb on + strand, within AO353_06210at 1385.675 kb on + strand, within AO353_06210at 1385.675 kb on + strand, within AO353_06210at 1385.675 kb on + strand, within AO353_06210at 1385.676 kb on - strand, within AO353_06210at 1385.676 kb on - strand, within AO353_06210at 1385.676 kb on - strand, within AO353_06210at 1385.676 kb on - strand, within AO353_06210at 1385.676 kb on - strand, within AO353_06210at 1385.820 kb on + strand, within AO353_06210at 1385.820 kb on + strand, within AO353_06210at 1385.820 kb on + strand, within AO353_06210at 1385.821 kb on - strand, within AO353_06210at 1385.821 kb on - strand, within AO353_06210at 1385.821 kb on - strand, within AO353_06210at 1385.821 kb on - strand, within AO353_06210at 1385.821 kb on - strand, within AO353_06210at 1386.035 kb on + strand, within AO353_06210at 1386.035 kb on + strand, within AO353_06210at 1386.035 kb on + strand, within AO353_06210at 1386.035 kb on + strand, within AO353_06210at 1386.035 kb on + strand, within AO353_06210at 1386.036 kb on - strand, within AO353_06210at 1386.036 kb on - strand, within AO353_06210at 1386.036 kb on - strand, within AO353_06210at 1386.037 kb on + strand, within AO353_06210at 1386.037 kb on + strand, within AO353_06210at 1386.037 kb on + strand, within AO353_06210at 1386.038 kb on - strand, within AO353_06210at 1386.038 kb on - strand, within AO353_06210at 1386.038 kb on - strand, within AO353_06210at 1386.113 kb on + strandat 1386.113 kb on + strandat 1386.113 kb on + strandat 1386.113 kb on + strandat 1386.113 kb on + strandat 1386.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,383,487 + AO353_06200 0.49 -1.9
1,383,487 + AO353_06200 0.49 -0.5
1,383,487 + AO353_06200 0.49 +0.8
1,383,488 - AO353_06200 0.49 +0.3
1,383,488 - AO353_06200 0.49 +0.3
1,383,488 - AO353_06200 0.49 +0.4
1,383,488 - AO353_06200 0.49 +0.9
1,383,493 + AO353_06200 0.50 +0.1
1,383,804 + AO353_06200 0.69 -1.7
1,383,804 + AO353_06200 0.69 +0.3
1,383,804 + AO353_06200 0.69 -0.5
1,383,805 - AO353_06200 0.69 +0.9
1,384,528 + AO353_06205 0.24 +0.2
1,384,528 + AO353_06205 0.24 +0.9
1,384,617 - AO353_06205 0.34 +1.2
1,384,683 + AO353_06205 0.42 +0.9
1,384,683 + AO353_06205 0.42 +0.6
1,384,683 + AO353_06205 0.42 +0.3
1,384,684 - AO353_06205 0.42 +0.4
1,384,684 - AO353_06205 0.42 -0.6
1,384,684 - AO353_06205 0.42 +1.0
1,384,774 + AO353_06205 0.52 +0.1
1,385,043 + AO353_06205 0.82 +1.8
1,385,043 + AO353_06205 0.82 -1.5
1,385,043 + AO353_06205 0.82 +0.8
1,385,044 - AO353_06205 0.83 -0.5
1,385,074 - AO353_06205 0.86 +0.9
1,385,074 - AO353_06205 0.86 +0.9
1,385,088 + AO353_06205 0.88 +0.8
1,385,088 + AO353_06205 0.88 +0.9
1,385,088 + AO353_06205 0.88 +0.5
1,385,088 + AO353_06205 0.88 +6.6
1,385,088 + AO353_06205 0.88 +2.1
1,385,088 + AO353_06205 0.88 -0.8
1,385,089 - AO353_06205 0.88 +0.2
1,385,089 - AO353_06205 0.88 -1.6
1,385,089 - AO353_06205 0.88 +1.3
1,385,089 - AO353_06205 0.88 -0.6
1,385,089 - AO353_06205 0.88 -0.1
1,385,189 + -1.1
1,385,252 + -2.2
1,385,252 + -0.3
1,385,273 - +0.5
1,385,446 - AO353_06210 0.17 +0.5
1,385,651 - AO353_06210 0.42 +0.6
1,385,651 - AO353_06210 0.42 +0.8
1,385,675 + AO353_06210 0.45 +0.7
1,385,675 + AO353_06210 0.45 +0.2
1,385,675 + AO353_06210 0.45 -1.3
1,385,675 + AO353_06210 0.45 +0.8
1,385,675 + AO353_06210 0.45 -0.8
1,385,675 + AO353_06210 0.45 +0.7
1,385,676 - AO353_06210 0.45 +1.2
1,385,676 - AO353_06210 0.45 +0.7
1,385,676 - AO353_06210 0.45 -0.6
1,385,676 - AO353_06210 0.45 -0.0
1,385,676 - AO353_06210 0.45 -0.0
1,385,820 + AO353_06210 0.62 +0.9
1,385,820 + AO353_06210 0.62 +1.8
1,385,820 + AO353_06210 0.62 -1.0
1,385,821 - AO353_06210 0.63 -0.2
1,385,821 - AO353_06210 0.63 +0.7
1,385,821 - AO353_06210 0.63 -0.5
1,385,821 - AO353_06210 0.63 +0.7
1,385,821 - AO353_06210 0.63 -2.0
1,386,035 + AO353_06210 0.89 -1.5
1,386,035 + AO353_06210 0.89 +0.4
1,386,035 + AO353_06210 0.89 +1.7
1,386,035 + AO353_06210 0.89 -1.1
1,386,035 + AO353_06210 0.89 +0.5
1,386,036 - AO353_06210 0.89 -1.0
1,386,036 - AO353_06210 0.89 -1.1
1,386,036 - AO353_06210 0.89 -1.1
1,386,037 + AO353_06210 0.89 -2.4
1,386,037 + AO353_06210 0.89 +0.4
1,386,037 + AO353_06210 0.89 -0.0
1,386,038 - AO353_06210 0.89 -0.4
1,386,038 - AO353_06210 0.89 -0.3
1,386,038 - AO353_06210 0.89 +0.9
1,386,113 + +0.1
1,386,113 + +0.2
1,386,113 + -0.1
1,386,113 + +1.5
1,386,113 + +0.5
1,386,114 - +0.3

Or see this region's nucleotide sequence