Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04455 and AO353_04460 are separated by 24 nucleotides AO353_04460 and AO353_04465 are separated by 28 nucleotides
AO353_04455: AO353_04455 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) , at 957,107 to 958,117
_04455
AO353_04460: AO353_04460 - N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data) , at 958,142 to 960,658
_04460
AO353_04465: AO353_04465 - N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) , at 960,687 to 962,402
_04465
Position (kb)
958
959
960
961 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 957.260 kb on + strand, within AO353_04455 at 957.260 kb on + strand, within AO353_04455 at 957.260 kb on + strand, within AO353_04455 at 957.260 kb on + strand, within AO353_04455 at 957.260 kb on + strand, within AO353_04455 at 957.260 kb on + strand, within AO353_04455 at 957.261 kb on - strand, within AO353_04455 at 957.261 kb on - strand at 957.261 kb on - strand, within AO353_04455 at 957.270 kb on - strand, within AO353_04455 at 957.292 kb on + strand, within AO353_04455 at 957.292 kb on + strand, within AO353_04455 at 957.293 kb on - strand, within AO353_04455 at 957.684 kb on + strand, within AO353_04455 at 957.684 kb on + strand, within AO353_04455 at 957.684 kb on + strand, within AO353_04455 at 957.684 kb on + strand, within AO353_04455 at 957.685 kb on - strand, within AO353_04455 at 957.685 kb on - strand, within AO353_04455 at 957.841 kb on + strand, within AO353_04455 at 957.841 kb on + strand, within AO353_04455 at 957.842 kb on - strand, within AO353_04455 at 957.845 kb on + strand, within AO353_04455 at 957.845 kb on + strand, within AO353_04455 at 957.845 kb on + strand, within AO353_04455 at 957.845 kb on + strand, within AO353_04455 at 957.846 kb on - strand, within AO353_04455 at 957.846 kb on - strand, within AO353_04455 at 957.933 kb on + strand, within AO353_04455 at 957.934 kb on - strand, within AO353_04455 at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.032 kb on - strand at 958.032 kb on - strand at 958.032 kb on - strand at 958.032 kb on - strand at 958.032 kb on - strand at 958.147 kb on + strand at 958.147 kb on + strand at 958.147 kb on + strand at 958.147 kb on + strand at 958.147 kb on + strand at 958.147 kb on + strand at 958.147 kb on + strand at 958.147 kb on + strand at 958.148 kb on - strand at 958.148 kb on - strand at 958.148 kb on - strand at 958.157 kb on - strand at 958.157 kb on - strand at 958.157 kb on - strand at 958.498 kb on + strand, within AO353_04460 at 958.498 kb on + strand, within AO353_04460 at 958.498 kb on + strand, within AO353_04460 at 958.498 kb on + strand, within AO353_04460 at 958.498 kb on + strand, within AO353_04460 at 958.498 kb on + strand, within AO353_04460 at 958.498 kb on + strand, within AO353_04460 at 958.499 kb on - strand, within AO353_04460 at 958.499 kb on - strand, within AO353_04460 at 958.499 kb on - strand, within AO353_04460 at 958.951 kb on + strand, within AO353_04460 at 959.065 kb on + strand, within AO353_04460 at 959.301 kb on + strand, within AO353_04460 at 959.301 kb on + strand, within AO353_04460 at 959.301 kb on + strand, within AO353_04460 at 959.301 kb on + strand, within AO353_04460 at 959.301 kb on + strand, within AO353_04460 at 959.302 kb on - strand, within AO353_04460 at 959.302 kb on - strand, within AO353_04460 at 959.302 kb on - strand, within AO353_04460 at 959.370 kb on + strand, within AO353_04460 at 959.402 kb on + strand at 959.402 kb on + strand, within AO353_04460 at 959.409 kb on + strand, within AO353_04460 at 959.409 kb on + strand, within AO353_04460 at 959.409 kb on + strand, within AO353_04460 at 959.442 kb on + strand, within AO353_04460 at 959.523 kb on + strand, within AO353_04460 at 959.523 kb on + strand, within AO353_04460 at 959.523 kb on + strand, within AO353_04460 at 960.048 kb on + strand, within AO353_04460 at 960.048 kb on + strand, within AO353_04460 at 960.049 kb on - strand, within AO353_04460 at 960.049 kb on - strand, within AO353_04460 at 960.155 kb on + strand, within AO353_04460 at 960.155 kb on + strand, within AO353_04460 at 960.155 kb on + strand, within AO353_04460 at 960.156 kb on - strand, within AO353_04460 at 960.156 kb on - strand, within AO353_04460 at 960.156 kb on - strand, within AO353_04460 at 960.156 kb on - strand, within AO353_04460 at 960.314 kb on + strand, within AO353_04460 at 960.314 kb on + strand, within AO353_04460 at 960.314 kb on + strand, within AO353_04460 at 960.315 kb on - strand, within AO353_04460 at 960.315 kb on - strand, within AO353_04460 at 960.656 kb on + strand at 960.657 kb on - strand at 960.681 kb on + strand at 960.681 kb on + strand at 960.682 kb on - strand at 960.682 kb on - strand at 960.682 kb on - strand at 960.682 kb on - strand at 960.682 kb on - strand at 960.682 kb on - strand at 960.682 kb on - strand at 960.682 kb on - strand at 960.690 kb on + strand at 960.690 kb on + strand at 960.690 kb on + strand at 960.690 kb on + strand at 960.690 kb on + strand at 960.690 kb on + strand at 960.690 kb on + strand at 960.690 kb on + strand at 960.690 kb on + strand at 960.690 kb on + strand at 960.691 kb on - strand at 960.691 kb on - strand at 960.691 kb on - strand at 960.691 kb on - strand at 960.691 kb on - strand at 960.691 kb on - strand at 960.691 kb on - strand at 960.691 kb on - strand at 960.691 kb on - strand at 960.691 kb on - strand at 960.691 kb on - strand at 960.691 kb on - strand at 960.930 kb on + strand, within AO353_04465 at 961.026 kb on + strand, within AO353_04465 at 961.026 kb on + strand, within AO353_04465 at 961.026 kb on + strand, within AO353_04465 at 961.026 kb on + strand, within AO353_04465 at 961.027 kb on - strand, within AO353_04465 at 961.027 kb on - strand, within AO353_04465 at 961.027 kb on - strand, within AO353_04465 at 961.059 kb on + strand, within AO353_04465 at 961.059 kb on + strand, within AO353_04465 at 961.059 kb on + strand, within AO353_04465 at 961.060 kb on - strand, within AO353_04465 at 961.350 kb on + strand, within AO353_04465 at 961.350 kb on + strand, within AO353_04465 at 961.350 kb on + strand, within AO353_04465 at 961.351 kb on - strand, within AO353_04465 at 961.351 kb on - strand, within AO353_04465 at 961.351 kb on - strand, within AO353_04465 at 961.351 kb on - strand, within AO353_04465 at 961.440 kb on + strand, within AO353_04465 at 961.440 kb on + strand, within AO353_04465 at 961.441 kb on - strand, within AO353_04465 at 961.569 kb on + strand, within AO353_04465 at 961.569 kb on + strand, within AO353_04465 at 961.569 kb on + strand, within AO353_04465 at 961.569 kb on + strand, within AO353_04465 at 961.569 kb on + strand, within AO353_04465 at 961.569 kb on + strand, within AO353_04465 at 961.569 kb on + strand, within AO353_04465 at 961.569 kb on + strand, within AO353_04465 at 961.569 kb on + strand, within AO353_04465 at 961.569 kb on + strand, within AO353_04465 at 961.569 kb on + strand, within AO353_04465 at 961.570 kb on - strand, within AO353_04465 at 961.570 kb on - strand, within AO353_04465 at 961.570 kb on - strand, within AO353_04465 at 961.570 kb on - strand, within AO353_04465 at 961.570 kb on - strand, within AO353_04465 at 961.570 kb on - strand, within AO353_04465 at 961.573 kb on + strand, within AO353_04465 at 961.573 kb on + strand, within AO353_04465 at 961.573 kb on + strand, within AO353_04465 at 961.573 kb on + strand, within AO353_04465 at 961.573 kb on + strand, within AO353_04465 at 961.574 kb on - strand, within AO353_04465 at 961.574 kb on - strand, within AO353_04465 at 961.574 kb on - strand, within AO353_04465 at 961.574 kb on - strand, within AO353_04465 at 961.574 kb on - strand, within AO353_04465 at 961.574 kb on - strand, within AO353_04465 at 961.574 kb on - strand, within AO353_04465 at 961.574 kb on - strand, within AO353_04465 at 961.574 kb on - strand, within AO353_04465
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 957,260 + AO353_04455 0.15 -1.1 957,260 + AO353_04455 0.15 +1.9 957,260 + AO353_04455 0.15 +0.7 957,260 + AO353_04455 0.15 -1.4 957,260 + AO353_04455 0.15 -0.3 957,260 + AO353_04455 0.15 +0.5 957,261 - AO353_04455 0.15 +0.4 957,261 - +1.3 957,261 - AO353_04455 0.15 -1.3 957,270 - AO353_04455 0.16 +0.0 957,292 + AO353_04455 0.18 -0.9 957,292 + AO353_04455 0.18 -0.2 957,293 - AO353_04455 0.18 -1.4 957,684 + AO353_04455 0.57 -1.8 957,684 + AO353_04455 0.57 +1.1 957,684 + AO353_04455 0.57 -0.8 957,684 + AO353_04455 0.57 +2.3 957,685 - AO353_04455 0.57 -1.4 957,685 - AO353_04455 0.57 -0.5 957,841 + AO353_04455 0.73 +1.3 957,841 + AO353_04455 0.73 +1.0 957,842 - AO353_04455 0.73 +0.3 957,845 + AO353_04455 0.73 -0.8 957,845 + AO353_04455 0.73 -0.1 957,845 + AO353_04455 0.73 +0.0 957,845 + AO353_04455 0.73 +0.3 957,846 - AO353_04455 0.73 -0.8 957,846 - AO353_04455 0.73 -0.2 957,933 + AO353_04455 0.82 +0.9 957,934 - AO353_04455 0.82 -1.0 958,031 + +0.7 958,031 + +0.5 958,031 + -1.1 958,031 + -1.0 958,031 + -0.5 958,031 + +0.5 958,031 + -0.3 958,031 + -0.5 958,031 + +0.2 958,031 + -1.2 958,031 + +0.0 958,031 + -2.1 958,031 + -0.3 958,032 - -0.7 958,032 - -1.7 958,032 - -0.0 958,032 - -1.0 958,032 - +0.0 958,147 + +0.6 958,147 + +0.0 958,147 + +0.5 958,147 + -0.4 958,147 + +1.1 958,147 + +0.3 958,147 + -0.5 958,147 + -0.5 958,148 - -0.8 958,148 - +3.6 958,148 - +1.0 958,157 - +1.3 958,157 - +0.6 958,157 - +0.3 958,498 + AO353_04460 0.14 -2.5 958,498 + AO353_04460 0.14 +2.0 958,498 + AO353_04460 0.14 +0.7 958,498 + AO353_04460 0.14 -0.2 958,498 + AO353_04460 0.14 +3.2 958,498 + AO353_04460 0.14 -1.6 958,498 + AO353_04460 0.14 +0.2 958,499 - AO353_04460 0.14 +1.0 958,499 - AO353_04460 0.14 -1.2 958,499 - AO353_04460 0.14 -0.1 958,951 + AO353_04460 0.32 +0.7 959,065 + AO353_04460 0.37 +2.7 959,301 + AO353_04460 0.46 +0.9 959,301 + AO353_04460 0.46 -0.3 959,301 + AO353_04460 0.46 +0.1 959,301 + AO353_04460 0.46 -0.8 959,301 + AO353_04460 0.46 -1.3 959,302 - AO353_04460 0.46 +0.3 959,302 - AO353_04460 0.46 +0.5 959,302 - AO353_04460 0.46 +1.6 959,370 + AO353_04460 0.49 +0.2 959,402 + +2.3 959,402 + AO353_04460 0.50 +1.7 959,409 + AO353_04460 0.50 +1.3 959,409 + AO353_04460 0.50 +0.2 959,409 + AO353_04460 0.50 +0.6 959,442 + AO353_04460 0.52 -0.5 959,523 + AO353_04460 0.55 +1.7 959,523 + AO353_04460 0.55 -1.3 959,523 + AO353_04460 0.55 -1.4 960,048 + AO353_04460 0.76 -0.0 960,048 + AO353_04460 0.76 +1.0 960,049 - AO353_04460 0.76 -1.1 960,049 - AO353_04460 0.76 -0.3 960,155 + AO353_04460 0.80 +1.0 960,155 + AO353_04460 0.80 -0.1 960,155 + AO353_04460 0.80 +0.5 960,156 - AO353_04460 0.80 +0.7 960,156 - AO353_04460 0.80 +0.3 960,156 - AO353_04460 0.80 -1.8 960,156 - AO353_04460 0.80 +0.7 960,314 + AO353_04460 0.86 +1.3 960,314 + AO353_04460 0.86 -0.3 960,314 + AO353_04460 0.86 -0.3 960,315 - AO353_04460 0.86 -0.6 960,315 - AO353_04460 0.86 +0.7 960,656 + +2.9 960,657 - +0.3 960,681 + +0.4 960,681 + -0.1 960,682 - -0.5 960,682 - +1.9 960,682 - -0.1 960,682 - -1.0 960,682 - +0.3 960,682 - -0.8 960,682 - -0.1 960,682 - -0.4 960,690 + +0.9 960,690 + +2.3 960,690 + +1.1 960,690 + +0.5 960,690 + -0.8 960,690 + +0.7 960,690 + +1.9 960,690 + +0.2 960,690 + -0.1 960,690 + -1.0 960,691 - -1.3 960,691 - -0.2 960,691 - -2.2 960,691 - +1.3 960,691 - +0.2 960,691 - -0.5 960,691 - +0.6 960,691 - -1.5 960,691 - -0.9 960,691 - +0.5 960,691 - -0.6 960,691 - -1.5 960,930 + AO353_04465 0.14 -0.6 961,026 + AO353_04465 0.20 +0.0 961,026 + AO353_04465 0.20 -1.0 961,026 + AO353_04465 0.20 +1.6 961,026 + AO353_04465 0.20 +0.0 961,027 - AO353_04465 0.20 +0.5 961,027 - AO353_04465 0.20 +0.7 961,027 - AO353_04465 0.20 +1.1 961,059 + AO353_04465 0.22 -0.0 961,059 + AO353_04465 0.22 +0.4 961,059 + AO353_04465 0.22 +1.0 961,060 - AO353_04465 0.22 +1.7 961,350 + AO353_04465 0.39 -0.5 961,350 + AO353_04465 0.39 +0.5 961,350 + AO353_04465 0.39 -0.8 961,351 - AO353_04465 0.39 -0.5 961,351 - AO353_04465 0.39 -0.6 961,351 - AO353_04465 0.39 -1.2 961,351 - AO353_04465 0.39 -1.1 961,440 + AO353_04465 0.44 -0.5 961,440 + AO353_04465 0.44 -0.1 961,441 - AO353_04465 0.44 +1.0 961,569 + AO353_04465 0.51 -0.6 961,569 + AO353_04465 0.51 -0.3 961,569 + AO353_04465 0.51 +0.6 961,569 + AO353_04465 0.51 +0.3 961,569 + AO353_04465 0.51 -1.7 961,569 + AO353_04465 0.51 +0.0 961,569 + AO353_04465 0.51 -1.1 961,569 + AO353_04465 0.51 +0.7 961,569 + AO353_04465 0.51 +1.0 961,569 + AO353_04465 0.51 -0.4 961,569 + AO353_04465 0.51 -1.9 961,570 - AO353_04465 0.51 -0.6 961,570 - AO353_04465 0.51 -0.5 961,570 - AO353_04465 0.51 +0.5 961,570 - AO353_04465 0.51 +1.5 961,570 - AO353_04465 0.51 -0.3 961,570 - AO353_04465 0.51 +0.3 961,573 + AO353_04465 0.52 -2.2 961,573 + AO353_04465 0.52 +0.5 961,573 + AO353_04465 0.52 -0.6 961,573 + AO353_04465 0.52 +0.5 961,573 + AO353_04465 0.52 +0.6 961,574 - AO353_04465 0.52 +0.0 961,574 - AO353_04465 0.52 -0.1 961,574 - AO353_04465 0.52 +0.0 961,574 - AO353_04465 0.52 +0.9 961,574 - AO353_04465 0.52 +0.0 961,574 - AO353_04465 0.52 -0.7 961,574 - AO353_04465 0.52 +0.3 961,574 - AO353_04465 0.52 -1.1 961,574 - AO353_04465 0.52 +1.7
Or see this region's nucleotide sequence