Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04065

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04055 and AO353_04060 are separated by 120 nucleotidesAO353_04060 and AO353_04065 overlap by 4 nucleotidesAO353_04065 and AO353_04070 overlap by 14 nucleotidesAO353_04070 and AO353_04075 overlap by 4 nucleotides AO353_04055: AO353_04055 - methionine--tRNA ligase, at 871,952 to 874,003 _04055 AO353_04060: AO353_04060 - NADH:quinone oxidoreductase, at 874,124 to 874,711 _04060 AO353_04065: AO353_04065 - electron transporter RnfB, at 874,708 to 875,922 _04065 AO353_04070: AO353_04070 - electron transporter RnfD, at 875,909 to 876,907 _04070 AO353_04075: AO353_04075 - electron transporter RnfG, at 876,904 to 877,509 _04075 Position (kb) 874 875 876Strain fitness (log2 ratio) -2 -1 0 1 2at 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.060 kb on + strandat 874.075 kb on + strandat 874.089 kb on + strandat 874.089 kb on + strandat 874.168 kb on + strandat 874.168 kb on + strandat 874.313 kb on + strand, within AO353_04060at 874.313 kb on + strand, within AO353_04060at 874.352 kb on + strand, within AO353_04060at 874.352 kb on + strand, within AO353_04060at 874.352 kb on + strand, within AO353_04060at 874.352 kb on + strand, within AO353_04060at 874.353 kb on - strand, within AO353_04060at 874.353 kb on - strand, within AO353_04060at 874.380 kb on + strand, within AO353_04060at 874.380 kb on + strand, within AO353_04060at 874.381 kb on - strand, within AO353_04060at 874.381 kb on - strand, within AO353_04060at 874.390 kb on + strand, within AO353_04060at 874.391 kb on - strand, within AO353_04060at 874.523 kb on + strand, within AO353_04060at 874.524 kb on - strand, within AO353_04060at 874.530 kb on + strand, within AO353_04060at 874.530 kb on + strand, within AO353_04060at 874.530 kb on + strand, within AO353_04060at 874.536 kb on + strand, within AO353_04060at 874.536 kb on + strand, within AO353_04060at 874.536 kb on + strand, within AO353_04060at 874.536 kb on + strand, within AO353_04060at 874.536 kb on + strand, within AO353_04060at 874.537 kb on - strand, within AO353_04060at 874.537 kb on - strand, within AO353_04060at 874.537 kb on - strandat 874.537 kb on - strand, within AO353_04060at 874.725 kb on + strandat 874.725 kb on + strandat 874.725 kb on + strandat 874.787 kb on - strandat 874.933 kb on - strand, within AO353_04065at 874.986 kb on - strand, within AO353_04065at 875.060 kb on + strand, within AO353_04065at 875.060 kb on + strand, within AO353_04065at 875.061 kb on - strand, within AO353_04065at 875.061 kb on - strand, within AO353_04065at 875.099 kb on + strand, within AO353_04065at 875.100 kb on - strand, within AO353_04065at 875.742 kb on - strand, within AO353_04065at 875.742 kb on - strand, within AO353_04065at 875.801 kb on - strandat 875.841 kb on + strandat 875.841 kb on + strandat 875.841 kb on + strandat 875.841 kb on + strandat 875.841 kb on + strandat 875.841 kb on + strandat 875.842 kb on - strandat 875.842 kb on - strandat 875.842 kb on - strandat 875.842 kb on - strandat 875.842 kb on - strandat 875.842 kb on - strandat 875.842 kb on - strandat 875.900 kb on + strandat 875.900 kb on + strandat 875.901 kb on - strandat 875.908 kb on + strandat 875.908 kb on + strandat 875.908 kb on + strandat 875.908 kb on + strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.964 kb on + strandat 876.003 kb on + strandat 876.003 kb on + strandat 876.089 kb on + strand, within AO353_04070at 876.090 kb on - strand, within AO353_04070at 876.157 kb on - strand, within AO353_04070at 876.164 kb on + strand, within AO353_04070at 876.164 kb on + strand, within AO353_04070at 876.164 kb on + strand, within AO353_04070at 876.164 kb on + strand, within AO353_04070at 876.164 kb on + strand, within AO353_04070at 876.164 kb on + strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.282 kb on + strand, within AO353_04070at 876.283 kb on - strand, within AO353_04070at 876.283 kb on - strand, within AO353_04070at 876.283 kb on - strand, within AO353_04070at 876.283 kb on - strand, within AO353_04070at 876.424 kb on + strand, within AO353_04070at 876.500 kb on - strand, within AO353_04070at 876.505 kb on + strand, within AO353_04070at 876.506 kb on - strand, within AO353_04070at 876.552 kb on + strand, within AO353_04070at 876.707 kb on - strand, within AO353_04070at 876.785 kb on + strand, within AO353_04070at 876.785 kb on + strand, within AO353_04070at 876.785 kb on + strand, within AO353_04070at 876.785 kb on + strand, within AO353_04070at 876.786 kb on + strand, within AO353_04070at 876.786 kb on - strand, within AO353_04070at 876.786 kb on - strand, within AO353_04070at 876.786 kb on - strand, within AO353_04070at 876.898 kb on + strandat 876.898 kb on + strandat 876.899 kb on - strandat 876.899 kb on - strandat 876.899 kb on - strandat 876.899 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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874,001 + +0.9
874,001 + -0.6
874,001 + +0.3
874,001 + +0.4
874,001 + -0.2
874,001 + +0.4
874,001 + +0.1
874,001 + +0.5
874,001 + -1.3
874,002 - +0.9
874,002 - -0.9
874,002 - -1.3
874,002 - -0.5
874,002 - -1.0
874,002 - +0.2
874,002 - +0.3
874,002 - -1.1
874,002 - -1.3
874,002 - -1.3
874,002 - -1.0
874,002 - -0.4
874,002 - -0.0
874,002 - -0.2
874,002 - -0.9
874,002 - +1.0
874,002 - +0.9
874,002 - -1.3
874,002 - +2.3
874,002 - +1.5
874,060 + +1.1
874,075 + -0.2
874,089 + -0.9
874,089 + -0.9
874,168 + -0.8
874,168 + -1.9
874,313 + AO353_04060 0.32 -0.2
874,313 + AO353_04060 0.32 -1.7
874,352 + AO353_04060 0.39 +1.7
874,352 + AO353_04060 0.39 +0.2
874,352 + AO353_04060 0.39 -2.3
874,352 + AO353_04060 0.39 -0.9
874,353 - AO353_04060 0.39 +1.0
874,353 - AO353_04060 0.39 -1.0
874,380 + AO353_04060 0.44 +0.5
874,380 + AO353_04060 0.44 -0.0
874,381 - AO353_04060 0.44 +0.5
874,381 - AO353_04060 0.44 -1.0
874,390 + AO353_04060 0.45 -0.3
874,391 - AO353_04060 0.45 +1.7
874,523 + AO353_04060 0.68 +1.0
874,524 - AO353_04060 0.68 -0.2
874,530 + AO353_04060 0.69 +0.9
874,530 + AO353_04060 0.69 +0.5
874,530 + AO353_04060 0.69 +2.3
874,536 + AO353_04060 0.70 +1.0
874,536 + AO353_04060 0.70 +0.7
874,536 + AO353_04060 0.70 +1.5
874,536 + AO353_04060 0.70 -0.8
874,536 + AO353_04060 0.70 +0.6
874,537 - AO353_04060 0.70 +0.1
874,537 - AO353_04060 0.70 -1.5
874,537 - +1.3
874,537 - AO353_04060 0.70 -0.7
874,725 + +0.7
874,725 + +0.1
874,725 + -1.2
874,787 - -0.1
874,933 - AO353_04065 0.19 -0.9
874,986 - AO353_04065 0.23 -0.3
875,060 + AO353_04065 0.29 -0.4
875,060 + AO353_04065 0.29 +0.4
875,061 - AO353_04065 0.29 -0.5
875,061 - AO353_04065 0.29 -1.3
875,099 + AO353_04065 0.32 -1.7
875,100 - AO353_04065 0.32 -1.3
875,742 - AO353_04065 0.85 -0.3
875,742 - AO353_04065 0.85 -1.1
875,801 - -0.2
875,841 + -0.8
875,841 + +1.7
875,841 + +0.3
875,841 + -0.0
875,841 + +0.5
875,841 + -0.4
875,842 - +1.1
875,842 - -1.1
875,842 - +0.4
875,842 - -1.3
875,842 - +1.3
875,842 - +0.7
875,842 - +0.7
875,900 + -0.9
875,900 + +0.7
875,901 - -0.8
875,908 + +0.5
875,908 + +0.3
875,908 + -0.7
875,908 + -0.9
875,909 - -1.4
875,909 - +0.3
875,909 - +0.4
875,909 - +0.6
875,909 - -0.3
875,909 - +0.2
875,909 - -0.5
875,909 - +1.3
875,964 + +1.3
876,003 + +0.7
876,003 + -0.3
876,089 + AO353_04070 0.18 +0.3
876,090 - AO353_04070 0.18 -1.7
876,157 - AO353_04070 0.25 -0.3
876,164 + AO353_04070 0.26 -0.3
876,164 + AO353_04070 0.26 +0.7
876,164 + AO353_04070 0.26 +0.8
876,164 + AO353_04070 0.26 +0.4
876,164 + AO353_04070 0.26 -0.8
876,164 + AO353_04070 0.26 +0.9
876,165 - AO353_04070 0.26 +0.7
876,165 - AO353_04070 0.26 +0.7
876,165 - AO353_04070 0.26 -0.3
876,165 - AO353_04070 0.26 +1.7
876,165 - AO353_04070 0.26 +0.8
876,165 - AO353_04070 0.26 +0.2
876,165 - AO353_04070 0.26 -1.0
876,165 - AO353_04070 0.26 +1.9
876,282 + AO353_04070 0.37 -0.6
876,283 - AO353_04070 0.37 +0.3
876,283 - AO353_04070 0.37 +0.4
876,283 - AO353_04070 0.37 -1.2
876,283 - AO353_04070 0.37 -0.3
876,424 + AO353_04070 0.52 -0.0
876,500 - AO353_04070 0.59 -0.0
876,505 + AO353_04070 0.60 -1.3
876,506 - AO353_04070 0.60 -1.2
876,552 + AO353_04070 0.64 -0.3
876,707 - AO353_04070 0.80 -0.7
876,785 + AO353_04070 0.88 +0.2
876,785 + AO353_04070 0.88 -1.3
876,785 + AO353_04070 0.88 +0.2
876,785 + AO353_04070 0.88 -0.2
876,786 + AO353_04070 0.88 +0.4
876,786 - AO353_04070 0.88 -0.9
876,786 - AO353_04070 0.88 -2.2
876,786 - AO353_04070 0.88 -2.0
876,898 + -0.6
876,898 + -0.7
876,899 - -0.8
876,899 - -0.4
876,899 - -0.2
876,899 - +1.4

Or see this region's nucleotide sequence