Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03580

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_03570 and AO353_03575 overlap by 11 nucleotidesAO353_03575 and AO353_03580 are separated by 139 nucleotidesAO353_03580 and AO353_03585 are separated by 0 nucleotidesAO353_03585 and AO353_03590 are separated by 118 nucleotides AO353_03570: AO353_03570 - protein TolQ, at 763,580 to 764,275 _03570 AO353_03575: AO353_03575 - 4-hydroxybenzoyl-CoA thioesterase, at 764,265 to 764,732 _03575 AO353_03580: AO353_03580 - ATP-dependent DNA helicase RuvB, at 764,872 to 765,933 _03580 AO353_03585: AO353_03585 - ATP-dependent DNA helicase RuvA, at 765,934 to 766,542 _03585 AO353_03590: AO353_03590 - crossover junction endodeoxyribonuclease RuvC, at 766,661 to 767,185 _03590 Position (kb) 764 765 766Strain fitness (log2 ratio) -2 -1 0 1 2 3at 764.334 kb on + strand, within AO353_03575at 764.335 kb on - strand, within AO353_03575at 764.335 kb on - strand, within AO353_03575at 764.335 kb on - strand, within AO353_03575at 764.335 kb on - strand, within AO353_03575at 764.367 kb on - strand, within AO353_03575at 764.367 kb on - strand, within AO353_03575at 764.367 kb on - strand, within AO353_03575at 764.367 kb on - strand, within AO353_03575at 764.367 kb on - strand, within AO353_03575at 764.367 kb on - strand, within AO353_03575at 764.445 kb on - strand, within AO353_03575at 764.476 kb on - strand, within AO353_03575at 764.476 kb on - strand, within AO353_03575at 764.476 kb on - strand, within AO353_03575at 764.476 kb on - strand, within AO353_03575at 764.488 kb on - strand, within AO353_03575at 764.488 kb on - strand, within AO353_03575at 764.525 kb on - strand, within AO353_03575at 764.628 kb on - strand, within AO353_03575at 764.634 kb on - strand, within AO353_03575at 764.634 kb on - strand, within AO353_03575at 764.639 kb on - strand, within AO353_03575at 764.639 kb on - strand, within AO353_03575at 764.639 kb on - strand, within AO353_03575at 764.639 kb on - strand, within AO353_03575at 764.643 kb on - strand, within AO353_03575at 764.643 kb on - strand, within AO353_03575at 764.648 kb on - strand, within AO353_03575at 764.648 kb on - strand, within AO353_03575at 764.651 kb on - strand, within AO353_03575at 764.651 kb on - strand, within AO353_03575at 764.651 kb on - strand, within AO353_03575at 764.651 kb on - strand, within AO353_03575at 764.681 kb on - strand, within AO353_03575at 764.681 kb on - strand, within AO353_03575at 764.684 kb on - strand, within AO353_03575at 764.684 kb on - strand, within AO353_03575at 764.684 kb on - strand, within AO353_03575at 764.733 kb on - strandat 764.733 kb on - strandat 764.733 kb on - strandat 764.733 kb on - strandat 764.733 kb on - strandat 764.733 kb on - strandat 764.738 kb on - strandat 764.738 kb on - strandat 764.745 kb on - strandat 764.831 kb on - strandat 764.851 kb on + strandat 764.852 kb on - strandat 764.852 kb on - strandat 764.882 kb on - strandat 764.921 kb on - strandat 764.954 kb on + strandat 764.954 kb on + strandat 764.955 kb on - strandat 764.955 kb on - strandat 764.997 kb on + strand, within AO353_03580at 764.999 kb on + strand, within AO353_03580at 764.999 kb on + strand, within AO353_03580at 765.198 kb on + strand, within AO353_03580at 765.198 kb on + strand, within AO353_03580at 765.199 kb on - strand, within AO353_03580at 765.205 kb on - strand, within AO353_03580at 765.205 kb on - strand, within AO353_03580at 765.274 kb on - strand, within AO353_03580at 765.376 kb on - strand, within AO353_03580at 765.548 kb on + strand, within AO353_03580at 765.836 kb on + strandat 765.837 kb on - strandat 765.935 kb on + strandat 765.936 kb on - strandat 765.936 kb on - strandat 766.480 kb on + strand, within AO353_03585at 766.480 kb on + strand, within AO353_03585at 766.480 kb on + strand, within AO353_03585at 766.480 kb on + strand, within AO353_03585at 766.481 kb on - strand, within AO353_03585at 766.481 kb on - strand, within AO353_03585at 766.481 kb on - strand, within AO353_03585at 766.583 kb on + strandat 766.654 kb on + strandat 766.654 kb on + strandat 766.654 kb on + strandat 766.655 kb on - strandat 766.831 kb on + strand, within AO353_03590at 766.882 kb on - strand, within AO353_03590at 766.882 kb on - strand, within AO353_03590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
764,334 + AO353_03575 0.15 -0.1
764,335 - AO353_03575 0.15 +0.6
764,335 - AO353_03575 0.15 -0.9
764,335 - AO353_03575 0.15 -1.5
764,335 - AO353_03575 0.15 +1.4
764,367 - AO353_03575 0.22 -0.2
764,367 - AO353_03575 0.22 +0.6
764,367 - AO353_03575 0.22 -0.4
764,367 - AO353_03575 0.22 +2.2
764,367 - AO353_03575 0.22 -0.1
764,367 - AO353_03575 0.22 +0.6
764,445 - AO353_03575 0.38 -1.3
764,476 - AO353_03575 0.45 +0.3
764,476 - AO353_03575 0.45 -0.6
764,476 - AO353_03575 0.45 -0.1
764,476 - AO353_03575 0.45 +0.5
764,488 - AO353_03575 0.48 -0.2
764,488 - AO353_03575 0.48 +0.8
764,525 - AO353_03575 0.56 +1.2
764,628 - AO353_03575 0.78 +1.9
764,634 - AO353_03575 0.79 +2.2
764,634 - AO353_03575 0.79 -1.2
764,639 - AO353_03575 0.80 +0.9
764,639 - AO353_03575 0.80 +1.2
764,639 - AO353_03575 0.80 +0.6
764,639 - AO353_03575 0.80 -0.8
764,643 - AO353_03575 0.81 -0.1
764,643 - AO353_03575 0.81 -0.6
764,648 - AO353_03575 0.82 +0.9
764,648 - AO353_03575 0.82 -1.4
764,651 - AO353_03575 0.82 -1.1
764,651 - AO353_03575 0.82 -0.3
764,651 - AO353_03575 0.82 -1.7
764,651 - AO353_03575 0.82 -0.2
764,681 - AO353_03575 0.89 -0.4
764,681 - AO353_03575 0.89 +0.6
764,684 - AO353_03575 0.90 -0.9
764,684 - AO353_03575 0.90 +0.6
764,684 - AO353_03575 0.90 -1.1
764,733 - -0.1
764,733 - +0.1
764,733 - +0.2
764,733 - -0.5
764,733 - -0.8
764,733 - -0.1
764,738 - -1.0
764,738 - -0.3
764,745 - +0.4
764,831 - -0.4
764,851 + +0.3
764,852 - +1.8
764,852 - -1.9
764,882 - -0.1
764,921 - -1.9
764,954 + -1.1
764,954 + +0.3
764,955 - -0.1
764,955 - -1.6
764,997 + AO353_03580 0.12 -1.7
764,999 + AO353_03580 0.12 -1.4
764,999 + AO353_03580 0.12 -1.0
765,198 + AO353_03580 0.31 +1.9
765,198 + AO353_03580 0.31 -1.4
765,199 - AO353_03580 0.31 -0.1
765,205 - AO353_03580 0.31 -0.8
765,205 - AO353_03580 0.31 +0.6
765,274 - AO353_03580 0.38 -0.8
765,376 - AO353_03580 0.47 -0.8
765,548 + AO353_03580 0.64 -1.1
765,836 + -2.0
765,837 - +1.6
765,935 + -0.1
765,936 - +2.8
765,936 - +0.6
766,480 + AO353_03585 0.90 -0.6
766,480 + AO353_03585 0.90 +0.2
766,480 + AO353_03585 0.90 -0.8
766,480 + AO353_03585 0.90 -0.6
766,481 - AO353_03585 0.90 -1.1
766,481 - AO353_03585 0.90 -0.8
766,481 - AO353_03585 0.90 -0.8
766,583 + -1.9
766,654 + -0.4
766,654 + -1.2
766,654 + -0.8
766,655 - -0.2
766,831 + AO353_03590 0.32 -0.8
766,882 - AO353_03590 0.42 +1.2
766,882 - AO353_03590 0.42 -1.5

Or see this region's nucleotide sequence