Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03505 and AO353_03510 are separated by 41 nucleotides AO353_03510 and AO353_03515 are separated by 401 nucleotides AO353_03515 and AO353_03520 are separated by 96 nucleotides
AO353_03505: AO353_03505 - serine dehydratase, at 751,274 to 752,650
_03505
AO353_03510: AO353_03510 - glycine cleavage system protein T, at 752,692 to 753,816
_03510
AO353_03515: AO353_03515 - cold-shock protein, at 754,218 to 754,430
_03515
AO353_03520: AO353_03520 - hypothetical protein, at 754,527 to 755,015
_03520
Position (kb) 752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 751.703 kb on + strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.771 kb on + strand, within AO353_03505 at 751.771 kb on + strand, within AO353_03505 at 751.832 kb on + strand, within AO353_03505 at 751.832 kb on + strand, within AO353_03505 at 751.833 kb on - strand, within AO353_03505 at 752.084 kb on + strand, within AO353_03505 at 752.084 kb on + strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.261 kb on + strand, within AO353_03505 at 752.261 kb on + strand, within AO353_03505 at 752.261 kb on + strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.601 kb on - strand at 752.601 kb on - strand at 752.601 kb on - strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.773 kb on + strand at 752.956 kb on + strand, within AO353_03510 at 753.410 kb on - strand, within AO353_03510 at 753.472 kb on - strand, within AO353_03510 at 753.472 kb on - strand, within AO353_03510 at 753.527 kb on + strand, within AO353_03510 at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.773 kb on + strand at 753.774 kb on - strand at 753.802 kb on + strand at 753.802 kb on + strand at 753.803 kb on - strand at 753.803 kb on - strand at 753.803 kb on - strand at 753.803 kb on - strand at 753.803 kb on - strand at 753.828 kb on + strand at 753.828 kb on + strand at 753.829 kb on - strand at 753.829 kb on - strand at 753.830 kb on + strand at 753.830 kb on + strand at 753.831 kb on - strand at 753.831 kb on - strand at 753.831 kb on - strand at 753.835 kb on - strand at 753.858 kb on + strand at 753.859 kb on - strand at 753.891 kb on + strand at 753.891 kb on + strand at 753.926 kb on + strand at 753.926 kb on + strand at 753.926 kb on + strand at 753.929 kb on - strand at 753.955 kb on + strand at 754.041 kb on + strand at 754.051 kb on - strand at 754.103 kb on + strand at 754.108 kb on + strand at 754.108 kb on + strand at 754.109 kb on - strand at 754.109 kb on - strand at 754.109 kb on - strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.116 kb on - strand at 754.116 kb on - strand at 754.119 kb on + strand at 754.119 kb on + strand at 754.119 kb on + strand at 754.119 kb on + strand at 754.120 kb on - strand at 754.120 kb on - strand at 754.120 kb on - strand at 754.120 kb on - strand at 754.120 kb on - strand at 754.140 kb on + strand at 754.140 kb on + strand at 754.140 kb on + strand at 754.140 kb on + strand at 754.140 kb on + strand at 754.141 kb on - strand at 754.141 kb on - strand at 754.164 kb on - strand at 754.164 kb on - strand at 754.212 kb on + strand at 754.253 kb on + strand, within AO353_03515 at 754.277 kb on + strand, within AO353_03515 at 754.278 kb on - strand, within AO353_03515 at 754.331 kb on + strand, within AO353_03515 at 754.414 kb on + strand at 754.415 kb on - strand at 754.602 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.651 kb on - strand, within AO353_03520 at 754.651 kb on - strand, within AO353_03520
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 751,703 + AO353_03505 0.31 -0.4 751,704 - AO353_03505 0.31 +0.2 751,704 - AO353_03505 0.31 -1.5 751,704 - AO353_03505 0.31 -1.3 751,704 - AO353_03505 0.31 +5.6 751,771 + AO353_03505 0.36 +0.2 751,771 + AO353_03505 0.36 -1.7 751,832 + AO353_03505 0.41 +2.2 751,832 + AO353_03505 0.41 +0.2 751,833 - AO353_03505 0.41 +0.4 752,084 + AO353_03505 0.59 -1.5 752,084 + AO353_03505 0.59 -1.1 752,085 - AO353_03505 0.59 -1.3 752,085 - AO353_03505 0.59 -0.4 752,085 - AO353_03505 0.59 -1.5 752,085 - AO353_03505 0.59 -1.7 752,180 + AO353_03505 0.66 -1.8 752,180 + AO353_03505 0.66 -0.9 752,180 + AO353_03505 0.66 -0.4 752,180 + AO353_03505 0.66 +0.4 752,180 + AO353_03505 0.66 -1.3 752,181 - AO353_03505 0.66 -1.3 752,181 - AO353_03505 0.66 -0.5 752,181 - AO353_03505 0.66 -1.4 752,181 - AO353_03505 0.66 -1.4 752,181 - AO353_03505 0.66 -1.4 752,183 + AO353_03505 0.66 -1.9 752,183 + AO353_03505 0.66 -0.5 752,183 + AO353_03505 0.66 -1.9 752,183 + AO353_03505 0.66 -2.3 752,183 + AO353_03505 0.66 +0.0 752,183 + AO353_03505 0.66 -2.4 752,183 + AO353_03505 0.66 -0.1 752,183 + AO353_03505 0.66 -1.4 752,183 + AO353_03505 0.66 -0.6 752,183 + AO353_03505 0.66 -0.1 752,183 + AO353_03505 0.66 -2.1 752,183 + AO353_03505 0.66 -1.0 752,183 + AO353_03505 0.66 -2.7 752,184 - AO353_03505 0.66 +0.2 752,184 - AO353_03505 0.66 +0.0 752,184 - AO353_03505 0.66 -0.8 752,184 - AO353_03505 0.66 -1.4 752,184 - AO353_03505 0.66 +2.2 752,184 - AO353_03505 0.66 -1.9 752,184 - AO353_03505 0.66 -0.8 752,184 - AO353_03505 0.66 -1.3 752,184 - AO353_03505 0.66 -0.6 752,184 - AO353_03505 0.66 -0.5 752,184 - AO353_03505 0.66 -0.5 752,184 - AO353_03505 0.66 -0.8 752,261 + AO353_03505 0.72 -2.0 752,261 + AO353_03505 0.72 +0.0 752,261 + AO353_03505 0.72 -0.4 752,262 - AO353_03505 0.72 -1.3 752,262 - AO353_03505 0.72 -1.6 752,262 - AO353_03505 0.72 -0.6 752,262 - AO353_03505 0.72 -0.7 752,601 - -1.5 752,601 - +0.6 752,601 - -1.5 752,691 + +0.6 752,691 + +0.6 752,691 + +2.2 752,691 + +1.1 752,691 + +0.7 752,691 + +0.5 752,691 + +0.2 752,691 + +1.6 752,691 + +1.9 752,691 + +0.9 752,691 + +0.8 752,691 + -1.2 752,691 + +1.3 752,691 + +1.2 752,691 + +1.9 752,691 + +1.4 752,691 + +1.0 752,691 + +0.4 752,692 - +1.8 752,692 - +0.9 752,692 - +3.0 752,692 - +2.1 752,692 - +1.6 752,692 - +1.8 752,692 - +2.1 752,692 - +2.7 752,692 - +1.8 752,692 - +1.8 752,692 - +1.6 752,692 - +1.8 752,692 - +2.5 752,692 - +2.6 752,692 - +2.4 752,692 - +1.2 752,692 - +2.9 752,692 - +2.8 752,692 - +2.2 752,692 - +1.8 752,773 + +1.2 752,956 + AO353_03510 0.23 +4.2 753,410 - AO353_03510 0.64 +4.9 753,472 - AO353_03510 0.69 +4.4 753,472 - AO353_03510 0.69 +4.5 753,527 + AO353_03510 0.74 +3.9 753,712 + +3.8 753,712 + +3.3 753,712 + +2.1 753,712 + +3.4 753,712 + +6.1 753,712 + +3.8 753,712 + +4.8 753,712 + +3.9 753,712 + +3.3 753,712 + +5.8 753,712 + +3.9 753,712 + +3.9 753,712 + +4.2 753,712 + +4.3 753,712 + +4.0 753,713 - +4.4 753,713 - +4.8 753,713 - +4.7 753,713 - +5.5 753,713 - +4.0 753,713 - +4.5 753,713 - +4.8 753,713 - +4.7 753,713 - +4.9 753,746 + +4.2 753,746 + +4.5 753,746 + +4.6 753,746 + +3.9 753,746 + +3.7 753,746 + +4.6 753,747 - +4.3 753,747 - +4.8 753,747 - +5.0 753,747 - +4.3 753,747 - +5.1 753,747 - +4.3 753,747 - +5.7 753,747 - +5.2 753,773 + +5.4 753,774 - +4.8 753,802 + +2.3 753,802 + +2.5 753,803 - +4.2 753,803 - +5.2 753,803 - +3.8 753,803 - +4.5 753,803 - +5.1 753,828 + -0.6 753,828 + +1.0 753,829 - +0.6 753,829 - +0.5 753,830 + +0.2 753,830 + -0.1 753,831 - +2.9 753,831 - +0.2 753,831 - +1.0 753,835 - +1.7 753,858 + +1.2 753,859 - -0.0 753,891 + +0.6 753,891 + +0.4 753,926 + +0.5 753,926 + +1.2 753,926 + -1.7 753,929 - -0.1 753,955 + +0.6 754,041 + +1.5 754,051 - +0.0 754,103 + +1.9 754,108 + +0.9 754,108 + +1.1 754,109 - +0.9 754,109 - +1.5 754,109 - +1.0 754,115 + +1.0 754,115 + +0.2 754,115 + +1.8 754,115 + -0.3 754,115 + +0.4 754,115 + +1.5 754,116 - +0.6 754,116 - -0.6 754,119 + -0.2 754,119 + +1.8 754,119 + +0.1 754,119 + +2.5 754,120 - -0.0 754,120 - +0.8 754,120 - +0.6 754,120 - +0.9 754,120 - +0.8 754,140 + +2.3 754,140 + +1.3 754,140 + +1.6 754,140 + +1.7 754,140 + -1.8 754,141 - +2.0 754,141 - +0.4 754,164 - +0.9 754,164 - +2.0 754,212 + -0.3 754,253 + AO353_03515 0.16 +0.2 754,277 + AO353_03515 0.28 +0.8 754,278 - AO353_03515 0.28 +0.6 754,331 + AO353_03515 0.53 +0.8 754,414 + +0.6 754,415 - +0.5 754,602 + AO353_03520 0.15 -0.5 754,650 + AO353_03520 0.25 +1.1 754,650 + AO353_03520 0.25 -0.4 754,650 + AO353_03520 0.25 +1.8 754,650 + AO353_03520 0.25 +0.9 754,650 + AO353_03520 0.25 -0.9 754,651 - AO353_03520 0.25 +0.8 754,651 - AO353_03520 0.25 -2.1
Or see this region's nucleotide sequence