Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03500 and AO353_03505 are separated by 185 nucleotides AO353_03505 and AO353_03510 are separated by 41 nucleotides
AO353_03500: AO353_03500 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) <small>(from data)</small>, at 748,236 to 751,088
_03500
AO353_03505: AO353_03505 - serine dehydratase, at 751,274 to 752,650
_03505
AO353_03510: AO353_03510 - glycine cleavage system protein T, at 752,692 to 753,816
_03510
Position (kb) 751
752
753 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.607 kb on - strand, within AO353_03500 at 750.618 kb on + strand, within AO353_03500 at 750.618 kb on + strand, within AO353_03500 at 750.618 kb on + strand, within AO353_03500 at 750.619 kb on - strand, within AO353_03500 at 750.952 kb on - strand at 750.973 kb on - strand at 751.002 kb on + strand at 751.002 kb on + strand at 751.002 kb on + strand at 751.003 kb on - strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.081 kb on - strand at 751.081 kb on - strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.146 kb on + strand at 751.146 kb on + strand at 751.147 kb on - strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.251 kb on + strand at 751.252 kb on - strand at 751.252 kb on - strand at 751.281 kb on + strand at 751.638 kb on - strand, within AO353_03505 at 751.703 kb on + strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.771 kb on + strand, within AO353_03505 at 751.771 kb on + strand, within AO353_03505 at 751.832 kb on + strand, within AO353_03505 at 751.832 kb on + strand, within AO353_03505 at 751.833 kb on - strand, within AO353_03505 at 752.084 kb on + strand, within AO353_03505 at 752.084 kb on + strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.261 kb on + strand, within AO353_03505 at 752.261 kb on + strand, within AO353_03505 at 752.261 kb on + strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.601 kb on - strand at 752.601 kb on - strand at 752.601 kb on - strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.773 kb on + strand at 752.956 kb on + strand, within AO353_03510 at 753.410 kb on - strand, within AO353_03510 at 753.472 kb on - strand, within AO353_03510 at 753.472 kb on - strand, within AO353_03510 at 753.527 kb on + strand, within AO353_03510
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 750,513 + AO353_03500 0.80 +2.2 750,513 + AO353_03500 0.80 +0.1 750,513 + AO353_03500 0.80 -0.2 750,513 + AO353_03500 0.80 +1.5 750,513 + AO353_03500 0.80 -0.4 750,513 + AO353_03500 0.80 -2.3 750,513 + AO353_03500 0.80 -0.6 750,514 - AO353_03500 0.80 +0.6 750,514 - AO353_03500 0.80 -0.5 750,514 - AO353_03500 0.80 -0.4 750,514 - AO353_03500 0.80 -0.8 750,514 - AO353_03500 0.80 +0.0 750,514 - AO353_03500 0.80 -2.7 750,514 - AO353_03500 0.80 -0.7 750,579 + AO353_03500 0.82 +0.2 750,579 + AO353_03500 0.82 +0.2 750,579 + AO353_03500 0.82 -0.7 750,579 + AO353_03500 0.82 -0.1 750,579 + AO353_03500 0.82 -2.3 750,580 - AO353_03500 0.82 -1.0 750,580 - AO353_03500 0.82 +0.2 750,580 - AO353_03500 0.82 -1.8 750,580 - AO353_03500 0.82 -1.0 750,607 - AO353_03500 0.83 -2.0 750,618 + AO353_03500 0.83 +1.4 750,618 + AO353_03500 0.83 +1.2 750,618 + AO353_03500 0.83 +0.6 750,619 - AO353_03500 0.84 -1.0 750,952 - -0.6 750,973 - -0.4 751,002 + +6.1 751,002 + +4.4 751,002 + +3.7 751,003 - -0.2 751,080 + +7.0 751,080 + +6.4 751,080 + +5.2 751,080 + +6.4 751,080 + +8.8 751,081 - -2.4 751,081 - -0.6 751,091 + +7.0 751,091 + +7.6 751,091 + +7.6 751,091 + +5.8 751,091 + +7.8 751,091 + +5.7 751,091 + +8.0 751,091 + +6.6 751,091 + +7.6 751,091 + +6.7 751,091 + +6.6 751,091 + +4.0 751,091 + +10.0 751,092 - -1.0 751,092 - -1.7 751,092 - -1.8 751,092 - -2.9 751,092 - -0.8 751,092 - -1.3 751,092 - -2.0 751,092 - -1.9 751,092 - -0.8 751,146 + +9.5 751,146 + +6.2 751,147 - -1.4 751,249 + +9.0 751,249 + +8.8 751,249 + +5.6 751,249 + +8.5 751,249 + +9.3 751,249 + +6.3 751,250 - +1.0 751,250 - -0.1 751,250 - -0.4 751,250 - +0.6 751,250 - -0.6 751,250 - -0.1 751,251 + +8.0 751,252 - -1.0 751,252 - -1.3 751,281 + -1.7 751,638 - AO353_03505 0.26 +0.6 751,703 + AO353_03505 0.31 -0.4 751,704 - AO353_03505 0.31 +0.2 751,704 - AO353_03505 0.31 -1.5 751,704 - AO353_03505 0.31 -1.3 751,704 - AO353_03505 0.31 +5.6 751,771 + AO353_03505 0.36 +0.2 751,771 + AO353_03505 0.36 -1.7 751,832 + AO353_03505 0.41 +2.2 751,832 + AO353_03505 0.41 +0.2 751,833 - AO353_03505 0.41 +0.4 752,084 + AO353_03505 0.59 -1.5 752,084 + AO353_03505 0.59 -1.1 752,085 - AO353_03505 0.59 -1.3 752,085 - AO353_03505 0.59 -0.4 752,085 - AO353_03505 0.59 -1.5 752,085 - AO353_03505 0.59 -1.7 752,180 + AO353_03505 0.66 -1.8 752,180 + AO353_03505 0.66 -0.9 752,180 + AO353_03505 0.66 -0.4 752,180 + AO353_03505 0.66 +0.4 752,180 + AO353_03505 0.66 -1.3 752,181 - AO353_03505 0.66 -1.3 752,181 - AO353_03505 0.66 -0.5 752,181 - AO353_03505 0.66 -1.4 752,181 - AO353_03505 0.66 -1.4 752,181 - AO353_03505 0.66 -1.4 752,183 + AO353_03505 0.66 -1.9 752,183 + AO353_03505 0.66 -0.5 752,183 + AO353_03505 0.66 -1.9 752,183 + AO353_03505 0.66 -2.3 752,183 + AO353_03505 0.66 +0.0 752,183 + AO353_03505 0.66 -2.4 752,183 + AO353_03505 0.66 -0.1 752,183 + AO353_03505 0.66 -1.4 752,183 + AO353_03505 0.66 -0.6 752,183 + AO353_03505 0.66 -0.1 752,183 + AO353_03505 0.66 -2.1 752,183 + AO353_03505 0.66 -1.0 752,183 + AO353_03505 0.66 -2.7 752,184 - AO353_03505 0.66 +0.2 752,184 - AO353_03505 0.66 +0.0 752,184 - AO353_03505 0.66 -0.8 752,184 - AO353_03505 0.66 -1.4 752,184 - AO353_03505 0.66 +2.2 752,184 - AO353_03505 0.66 -1.9 752,184 - AO353_03505 0.66 -0.8 752,184 - AO353_03505 0.66 -1.3 752,184 - AO353_03505 0.66 -0.6 752,184 - AO353_03505 0.66 -0.5 752,184 - AO353_03505 0.66 -0.5 752,184 - AO353_03505 0.66 -0.8 752,261 + AO353_03505 0.72 -2.0 752,261 + AO353_03505 0.72 +0.0 752,261 + AO353_03505 0.72 -0.4 752,262 - AO353_03505 0.72 -1.3 752,262 - AO353_03505 0.72 -1.6 752,262 - AO353_03505 0.72 -0.6 752,262 - AO353_03505 0.72 -0.7 752,601 - -1.5 752,601 - +0.6 752,601 - -1.5 752,691 + +0.6 752,691 + +0.6 752,691 + +2.2 752,691 + +1.1 752,691 + +0.7 752,691 + +0.5 752,691 + +0.2 752,691 + +1.6 752,691 + +1.9 752,691 + +0.9 752,691 + +0.8 752,691 + -1.2 752,691 + +1.3 752,691 + +1.2 752,691 + +1.9 752,691 + +1.4 752,691 + +1.0 752,691 + +0.4 752,692 - +1.8 752,692 - +0.9 752,692 - +3.0 752,692 - +2.1 752,692 - +1.6 752,692 - +1.8 752,692 - +2.1 752,692 - +2.7 752,692 - +1.8 752,692 - +1.8 752,692 - +1.6 752,692 - +1.8 752,692 - +2.5 752,692 - +2.6 752,692 - +2.4 752,692 - +1.2 752,692 - +2.9 752,692 - +2.8 752,692 - +2.2 752,692 - +1.8 752,773 + +1.2 752,956 + AO353_03510 0.23 +4.2 753,410 - AO353_03510 0.64 +4.9 753,472 - AO353_03510 0.69 +4.4 753,472 - AO353_03510 0.69 +4.5 753,527 + AO353_03510 0.74 +3.9
Or see this region's nucleotide sequence