Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03505

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03500 and AO353_03505 are separated by 185 nucleotidesAO353_03505 and AO353_03510 are separated by 41 nucleotides AO353_03500: AO353_03500 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data), at 748,236 to 751,088 _03500 AO353_03505: AO353_03505 - serine dehydratase, at 751,274 to 752,650 _03505 AO353_03510: AO353_03510 - glycine cleavage system protein T, at 752,692 to 753,816 _03510 Position (kb) 751 752 753Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 750.513 kb on + strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.579 kb on + strand, within AO353_03500at 750.579 kb on + strand, within AO353_03500at 750.579 kb on + strand, within AO353_03500at 750.579 kb on + strand, within AO353_03500at 750.579 kb on + strand, within AO353_03500at 750.580 kb on - strand, within AO353_03500at 750.580 kb on - strand, within AO353_03500at 750.580 kb on - strand, within AO353_03500at 750.580 kb on - strand, within AO353_03500at 750.607 kb on - strand, within AO353_03500at 750.618 kb on + strand, within AO353_03500at 750.618 kb on + strand, within AO353_03500at 750.618 kb on + strand, within AO353_03500at 750.619 kb on - strand, within AO353_03500at 750.952 kb on - strandat 750.973 kb on - strandat 751.002 kb on + strandat 751.002 kb on + strandat 751.002 kb on + strandat 751.003 kb on - strandat 751.080 kb on + strandat 751.080 kb on + strandat 751.080 kb on + strandat 751.080 kb on + strandat 751.080 kb on + strandat 751.081 kb on - strandat 751.081 kb on - strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.146 kb on + strandat 751.146 kb on + strandat 751.147 kb on - strandat 751.249 kb on + strandat 751.249 kb on + strandat 751.249 kb on + strandat 751.249 kb on + strandat 751.249 kb on + strandat 751.249 kb on + strandat 751.250 kb on - strandat 751.250 kb on - strandat 751.250 kb on - strandat 751.250 kb on - strandat 751.250 kb on - strandat 751.250 kb on - strandat 751.251 kb on + strandat 751.252 kb on - strandat 751.252 kb on - strandat 751.281 kb on + strandat 751.638 kb on - strand, within AO353_03505at 751.703 kb on + strand, within AO353_03505at 751.704 kb on - strand, within AO353_03505at 751.704 kb on - strand, within AO353_03505at 751.704 kb on - strand, within AO353_03505at 751.704 kb on - strand, within AO353_03505at 751.771 kb on + strand, within AO353_03505at 751.771 kb on + strand, within AO353_03505at 751.832 kb on + strand, within AO353_03505at 751.832 kb on + strand, within AO353_03505at 751.833 kb on - strand, within AO353_03505at 752.084 kb on + strand, within AO353_03505at 752.084 kb on + strand, within AO353_03505at 752.085 kb on - strand, within AO353_03505at 752.085 kb on - strand, within AO353_03505at 752.085 kb on - strand, within AO353_03505at 752.085 kb on - strand, within AO353_03505at 752.180 kb on + strand, within AO353_03505at 752.180 kb on + strand, within AO353_03505at 752.180 kb on + strand, within AO353_03505at 752.180 kb on + strand, within AO353_03505at 752.180 kb on + strand, within AO353_03505at 752.181 kb on - strand, within AO353_03505at 752.181 kb on - strand, within AO353_03505at 752.181 kb on - strand, within AO353_03505at 752.181 kb on - strand, within AO353_03505at 752.181 kb on - strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.183 kb on + strand, within AO353_03505at 752.184 kb on - strand, within AO353_03505at 752.184 kb on - strand, within AO353_03505at 752.184 kb on - strand, within AO353_03505at 752.184 kb on - strand, within AO353_03505at 752.184 kb on - strand, within AO353_03505at 752.184 kb on - strand, within AO353_03505at 752.184 kb on - strand, within AO353_03505at 752.184 kb on - strand, within AO353_03505at 752.184 kb on - strand, within AO353_03505at 752.184 kb on - strand, within AO353_03505at 752.184 kb on - strand, within AO353_03505at 752.184 kb on - strand, within AO353_03505at 752.261 kb on + strand, within AO353_03505at 752.261 kb on + strand, within AO353_03505at 752.261 kb on + strand, within AO353_03505at 752.262 kb on - strand, within AO353_03505at 752.262 kb on - strand, within AO353_03505at 752.262 kb on - strand, within AO353_03505at 752.262 kb on - strand, within AO353_03505at 752.601 kb on - strandat 752.601 kb on - strandat 752.601 kb on - strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.691 kb on + strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.692 kb on - strandat 752.773 kb on + strandat 752.956 kb on + strand, within AO353_03510at 753.410 kb on - strand, within AO353_03510at 753.472 kb on - strand, within AO353_03510at 753.472 kb on - strand, within AO353_03510at 753.527 kb on + strand, within AO353_03510

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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750,513 + AO353_03500 0.80 +2.2
750,513 + AO353_03500 0.80 +0.1
750,513 + AO353_03500 0.80 -0.2
750,513 + AO353_03500 0.80 +1.5
750,513 + AO353_03500 0.80 -0.4
750,513 + AO353_03500 0.80 -2.3
750,513 + AO353_03500 0.80 -0.6
750,514 - AO353_03500 0.80 +0.6
750,514 - AO353_03500 0.80 -0.5
750,514 - AO353_03500 0.80 -0.4
750,514 - AO353_03500 0.80 -0.8
750,514 - AO353_03500 0.80 +0.0
750,514 - AO353_03500 0.80 -2.7
750,514 - AO353_03500 0.80 -0.7
750,579 + AO353_03500 0.82 +0.2
750,579 + AO353_03500 0.82 +0.2
750,579 + AO353_03500 0.82 -0.7
750,579 + AO353_03500 0.82 -0.1
750,579 + AO353_03500 0.82 -2.3
750,580 - AO353_03500 0.82 -1.0
750,580 - AO353_03500 0.82 +0.2
750,580 - AO353_03500 0.82 -1.8
750,580 - AO353_03500 0.82 -1.0
750,607 - AO353_03500 0.83 -2.0
750,618 + AO353_03500 0.83 +1.4
750,618 + AO353_03500 0.83 +1.2
750,618 + AO353_03500 0.83 +0.6
750,619 - AO353_03500 0.84 -1.0
750,952 - -0.6
750,973 - -0.4
751,002 + +6.1
751,002 + +4.4
751,002 + +3.7
751,003 - -0.2
751,080 + +7.0
751,080 + +6.4
751,080 + +5.2
751,080 + +6.4
751,080 + +8.8
751,081 - -2.4
751,081 - -0.6
751,091 + +7.0
751,091 + +7.6
751,091 + +7.6
751,091 + +5.8
751,091 + +7.8
751,091 + +5.7
751,091 + +8.0
751,091 + +6.6
751,091 + +7.6
751,091 + +6.7
751,091 + +6.6
751,091 + +4.0
751,091 + +10.0
751,092 - -1.0
751,092 - -1.7
751,092 - -1.8
751,092 - -2.9
751,092 - -0.8
751,092 - -1.3
751,092 - -2.0
751,092 - -1.9
751,092 - -0.8
751,146 + +9.5
751,146 + +6.2
751,147 - -1.4
751,249 + +9.0
751,249 + +8.8
751,249 + +5.6
751,249 + +8.5
751,249 + +9.3
751,249 + +6.3
751,250 - +1.0
751,250 - -0.1
751,250 - -0.4
751,250 - +0.6
751,250 - -0.6
751,250 - -0.1
751,251 + +8.0
751,252 - -1.0
751,252 - -1.3
751,281 + -1.7
751,638 - AO353_03505 0.26 +0.6
751,703 + AO353_03505 0.31 -0.4
751,704 - AO353_03505 0.31 +0.2
751,704 - AO353_03505 0.31 -1.5
751,704 - AO353_03505 0.31 -1.3
751,704 - AO353_03505 0.31 +5.6
751,771 + AO353_03505 0.36 +0.2
751,771 + AO353_03505 0.36 -1.7
751,832 + AO353_03505 0.41 +2.2
751,832 + AO353_03505 0.41 +0.2
751,833 - AO353_03505 0.41 +0.4
752,084 + AO353_03505 0.59 -1.5
752,084 + AO353_03505 0.59 -1.1
752,085 - AO353_03505 0.59 -1.3
752,085 - AO353_03505 0.59 -0.4
752,085 - AO353_03505 0.59 -1.5
752,085 - AO353_03505 0.59 -1.7
752,180 + AO353_03505 0.66 -1.8
752,180 + AO353_03505 0.66 -0.9
752,180 + AO353_03505 0.66 -0.4
752,180 + AO353_03505 0.66 +0.4
752,180 + AO353_03505 0.66 -1.3
752,181 - AO353_03505 0.66 -1.3
752,181 - AO353_03505 0.66 -0.5
752,181 - AO353_03505 0.66 -1.4
752,181 - AO353_03505 0.66 -1.4
752,181 - AO353_03505 0.66 -1.4
752,183 + AO353_03505 0.66 -1.9
752,183 + AO353_03505 0.66 -0.5
752,183 + AO353_03505 0.66 -1.9
752,183 + AO353_03505 0.66 -2.3
752,183 + AO353_03505 0.66 +0.0
752,183 + AO353_03505 0.66 -2.4
752,183 + AO353_03505 0.66 -0.1
752,183 + AO353_03505 0.66 -1.4
752,183 + AO353_03505 0.66 -0.6
752,183 + AO353_03505 0.66 -0.1
752,183 + AO353_03505 0.66 -2.1
752,183 + AO353_03505 0.66 -1.0
752,183 + AO353_03505 0.66 -2.7
752,184 - AO353_03505 0.66 +0.2
752,184 - AO353_03505 0.66 +0.0
752,184 - AO353_03505 0.66 -0.8
752,184 - AO353_03505 0.66 -1.4
752,184 - AO353_03505 0.66 +2.2
752,184 - AO353_03505 0.66 -1.9
752,184 - AO353_03505 0.66 -0.8
752,184 - AO353_03505 0.66 -1.3
752,184 - AO353_03505 0.66 -0.6
752,184 - AO353_03505 0.66 -0.5
752,184 - AO353_03505 0.66 -0.5
752,184 - AO353_03505 0.66 -0.8
752,261 + AO353_03505 0.72 -2.0
752,261 + AO353_03505 0.72 +0.0
752,261 + AO353_03505 0.72 -0.4
752,262 - AO353_03505 0.72 -1.3
752,262 - AO353_03505 0.72 -1.6
752,262 - AO353_03505 0.72 -0.6
752,262 - AO353_03505 0.72 -0.7
752,601 - -1.5
752,601 - +0.6
752,601 - -1.5
752,691 + +0.6
752,691 + +0.6
752,691 + +2.2
752,691 + +1.1
752,691 + +0.7
752,691 + +0.5
752,691 + +0.2
752,691 + +1.6
752,691 + +1.9
752,691 + +0.9
752,691 + +0.8
752,691 + -1.2
752,691 + +1.3
752,691 + +1.2
752,691 + +1.9
752,691 + +1.4
752,691 + +1.0
752,691 + +0.4
752,692 - +1.8
752,692 - +0.9
752,692 - +3.0
752,692 - +2.1
752,692 - +1.6
752,692 - +1.8
752,692 - +2.1
752,692 - +2.7
752,692 - +1.8
752,692 - +1.8
752,692 - +1.6
752,692 - +1.8
752,692 - +2.5
752,692 - +2.6
752,692 - +2.4
752,692 - +1.2
752,692 - +2.9
752,692 - +2.8
752,692 - +2.2
752,692 - +1.8
752,773 + +1.2
752,956 + AO353_03510 0.23 +4.2
753,410 - AO353_03510 0.64 +4.9
753,472 - AO353_03510 0.69 +4.4
753,472 - AO353_03510 0.69 +4.5
753,527 + AO353_03510 0.74 +3.9

Or see this region's nucleotide sequence