Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03500

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03490 and AO353_03495 are separated by 495 nucleotidesAO353_03495 and AO353_03500 are separated by 9 nucleotidesAO353_03500 and AO353_03505 are separated by 185 nucleotides AO353_03490: AO353_03490 - Fis family transcriptional regulator, at 745,839 to 747,347 _03490 AO353_03495: AO353_03495 - glycine cleavage system protein H, at 747,843 to 748,226 _03495 AO353_03500: AO353_03500 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data), at 748,236 to 751,088 _03500 AO353_03505: AO353_03505 - serine dehydratase, at 751,274 to 752,650 _03505 Position (kb) 748 749 750 751 752Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 747.243 kb on + strandat 747.244 kb on - strandat 747.244 kb on - strandat 747.252 kb on + strandat 747.252 kb on + strandat 747.252 kb on + strandat 747.252 kb on + strandat 747.252 kb on + strandat 747.253 kb on - strandat 747.253 kb on - strandat 747.324 kb on + strandat 747.324 kb on + strandat 747.325 kb on - strandat 747.418 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.438 kb on - strandat 747.438 kb on - strandat 747.438 kb on - strandat 747.438 kb on - strandat 747.600 kb on - strandat 747.631 kb on - strandat 747.668 kb on + strandat 747.710 kb on - strandat 747.751 kb on + strandat 747.752 kb on - strandat 747.752 kb on - strandat 747.832 kb on + strandat 747.833 kb on - strandat 747.833 kb on - strandat 747.861 kb on - strandat 747.958 kb on + strand, within AO353_03495at 747.959 kb on - strand, within AO353_03495at 747.981 kb on + strand, within AO353_03495at 748.038 kb on + strand, within AO353_03495at 748.038 kb on + strand, within AO353_03495at 748.038 kb on + strand, within AO353_03495at 748.038 kb on + strand, within AO353_03495at 748.038 kb on + strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.192 kb on - strandat 748.246 kb on + strandat 748.246 kb on + strandat 748.246 kb on + strandat 748.246 kb on + strandat 748.246 kb on + strandat 748.247 kb on - strandat 748.247 kb on - strandat 748.247 kb on - strandat 748.247 kb on - strandat 748.252 kb on + strandat 748.252 kb on + strandat 748.252 kb on + strandat 748.252 kb on + strandat 748.252 kb on + strandat 748.252 kb on + strandat 748.253 kb on - strandat 748.479 kb on + strandat 748.479 kb on + strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.494 kb on + strandat 748.494 kb on + strandat 748.494 kb on + strandat 748.495 kb on - strandat 748.497 kb on + strandat 748.497 kb on + strandat 748.497 kb on + strandat 748.497 kb on + strandat 748.497 kb on + strandat 748.497 kb on + strandat 748.497 kb on + strandat 748.498 kb on - strandat 748.498 kb on - strandat 748.498 kb on - strandat 748.498 kb on - strandat 748.498 kb on - strandat 748.498 kb on - strandat 748.498 kb on - strandat 748.508 kb on + strandat 748.554 kb on + strand, within AO353_03500at 748.554 kb on + strand, within AO353_03500at 748.554 kb on + strand, within AO353_03500at 748.555 kb on - strand, within AO353_03500at 748.555 kb on - strand, within AO353_03500at 748.563 kb on + strand, within AO353_03500at 748.563 kb on + strand, within AO353_03500at 748.564 kb on - strand, within AO353_03500at 749.085 kb on + strand, within AO353_03500at 749.085 kb on + strand, within AO353_03500at 749.085 kb on + strand, within AO353_03500at 749.086 kb on - strand, within AO353_03500at 749.086 kb on - strand, within AO353_03500at 749.086 kb on - strand, within AO353_03500at 749.086 kb on - strand, within AO353_03500at 749.201 kb on + strand, within AO353_03500at 749.202 kb on - strand, within AO353_03500at 749.202 kb on - strand, within AO353_03500at 749.202 kb on - strand, within AO353_03500at 749.249 kb on - strand, within AO353_03500at 749.271 kb on + strand, within AO353_03500at 749.271 kb on + strand, within AO353_03500at 749.271 kb on + strand, within AO353_03500at 749.271 kb on + strand, within AO353_03500at 749.271 kb on + strand, within AO353_03500at 749.272 kb on - strand, within AO353_03500at 749.272 kb on - strand, within AO353_03500at 749.272 kb on - strand, within AO353_03500at 749.272 kb on - strand, within AO353_03500at 749.272 kb on - strand, within AO353_03500at 749.272 kb on - strandat 749.272 kb on - strand, within AO353_03500at 749.272 kb on - strand, within AO353_03500at 749.280 kb on + strand, within AO353_03500at 749.291 kb on + strand, within AO353_03500at 749.695 kb on - strand, within AO353_03500at 749.952 kb on + strand, within AO353_03500at 750.180 kb on + strand, within AO353_03500at 750.180 kb on + strand, within AO353_03500at 750.180 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.258 kb on + strand, within AO353_03500at 750.259 kb on - strand, within AO353_03500at 750.259 kb on - strand, within AO353_03500at 750.259 kb on - strand, within AO353_03500at 750.259 kb on - strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.513 kb on + strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.514 kb on - strand, within AO353_03500at 750.579 kb on + strand, within AO353_03500at 750.579 kb on + strand, within AO353_03500at 750.579 kb on + strand, within AO353_03500at 750.579 kb on + strand, within AO353_03500at 750.579 kb on + strand, within AO353_03500at 750.580 kb on - strand, within AO353_03500at 750.580 kb on - strand, within AO353_03500at 750.580 kb on - strand, within AO353_03500at 750.580 kb on - strand, within AO353_03500at 750.607 kb on - strand, within AO353_03500at 750.618 kb on + strand, within AO353_03500at 750.618 kb on + strand, within AO353_03500at 750.618 kb on + strand, within AO353_03500at 750.619 kb on - strand, within AO353_03500at 750.952 kb on - strandat 750.973 kb on - strandat 751.002 kb on + strandat 751.002 kb on + strandat 751.002 kb on + strandat 751.003 kb on - strandat 751.080 kb on + strandat 751.080 kb on + strandat 751.080 kb on + strandat 751.080 kb on + strandat 751.080 kb on + strandat 751.081 kb on - strandat 751.081 kb on - strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.091 kb on + strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.092 kb on - strandat 751.146 kb on + strandat 751.146 kb on + strandat 751.147 kb on - strandat 751.249 kb on + strandat 751.249 kb on + strandat 751.249 kb on + strandat 751.249 kb on + strandat 751.249 kb on + strandat 751.249 kb on + strandat 751.250 kb on - strandat 751.250 kb on - strandat 751.250 kb on - strandat 751.250 kb on - strandat 751.250 kb on - strandat 751.250 kb on - strandat 751.251 kb on + strandat 751.252 kb on - strandat 751.252 kb on - strandat 751.281 kb on + strandat 751.638 kb on - strand, within AO353_03505at 751.703 kb on + strand, within AO353_03505at 751.704 kb on - strand, within AO353_03505at 751.704 kb on - strand, within AO353_03505at 751.704 kb on - strand, within AO353_03505at 751.704 kb on - strand, within AO353_03505at 751.771 kb on + strand, within AO353_03505at 751.771 kb on + strand, within AO353_03505at 751.832 kb on + strand, within AO353_03505at 751.832 kb on + strand, within AO353_03505at 751.833 kb on - strand, within AO353_03505at 752.084 kb on + strand, within AO353_03505at 752.084 kb on + strand, within AO353_03505at 752.085 kb on - strand, within AO353_03505at 752.085 kb on - strand, within AO353_03505at 752.085 kb on - strand, within AO353_03505at 752.085 kb on - strand, within AO353_03505

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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747,243 + -1.0
747,244 - -2.4
747,244 - -0.6
747,252 + -0.8
747,252 + +0.2
747,252 + -1.0
747,252 + -0.5
747,252 + -1.0
747,253 - -1.3
747,253 - -1.3
747,324 + -0.1
747,324 + -1.8
747,325 - -0.1
747,418 + -1.1
747,437 + -0.1
747,437 + +0.9
747,437 + -0.3
747,437 + -0.9
747,438 - -1.4
747,438 - -1.1
747,438 - -0.6
747,438 - -2.0
747,600 - -0.5
747,631 - +0.2
747,668 + +4.5
747,710 - +0.2
747,751 + +5.2
747,752 - -0.6
747,752 - -1.8
747,832 + +6.7
747,833 - -2.0
747,833 - -1.6
747,861 - -1.0
747,958 + AO353_03495 0.30 +0.6
747,959 - AO353_03495 0.30 -0.1
747,981 + AO353_03495 0.36 +3.0
748,038 + AO353_03495 0.51 +3.0
748,038 + AO353_03495 0.51 +1.5
748,038 + AO353_03495 0.51 +1.4
748,038 + AO353_03495 0.51 -0.1
748,038 + AO353_03495 0.51 +2.0
748,039 - AO353_03495 0.51 -0.5
748,039 - AO353_03495 0.51 -1.8
748,039 - AO353_03495 0.51 -1.1
748,039 - AO353_03495 0.51 -0.4
748,039 - AO353_03495 0.51 -2.5
748,039 - AO353_03495 0.51 -0.6
748,039 - AO353_03495 0.51 -0.6
748,192 - -1.0
748,246 + +0.5
748,246 + -0.1
748,246 + -0.6
748,246 + -0.1
748,246 + -2.1
748,247 - +0.6
748,247 - +0.2
748,247 - -0.8
748,247 - -1.8
748,252 + +2.8
748,252 + -1.0
748,252 + +1.2
748,252 + -0.4
748,252 + -0.6
748,252 + -1.3
748,253 - -2.2
748,479 + -3.2
748,479 + -1.0
748,480 - -0.8
748,480 - -2.4
748,480 - -2.2
748,480 - +0.1
748,480 - -0.6
748,480 - +0.2
748,480 - -0.1
748,480 - +1.6
748,494 + +0.4
748,494 + -0.8
748,494 + -2.0
748,495 - -0.3
748,497 + +0.2
748,497 + -0.1
748,497 + -0.1
748,497 + -2.0
748,497 + -1.1
748,497 + +0.7
748,497 + -1.5
748,498 - +1.2
748,498 - -2.5
748,498 - -0.5
748,498 - +2.8
748,498 - -2.6
748,498 - -2.0
748,498 - -0.8
748,508 + -1.0
748,554 + AO353_03500 0.11 -0.4
748,554 + AO353_03500 0.11 -1.4
748,554 + AO353_03500 0.11 -0.4
748,555 - AO353_03500 0.11 -0.8
748,555 - AO353_03500 0.11 -1.9
748,563 + AO353_03500 0.11 -0.3
748,563 + AO353_03500 0.11 -1.3
748,564 - AO353_03500 0.11 -0.4
749,085 + AO353_03500 0.30 +0.4
749,085 + AO353_03500 0.30 -1.1
749,085 + AO353_03500 0.30 +0.2
749,086 - AO353_03500 0.30 -2.0
749,086 - AO353_03500 0.30 -1.0
749,086 - AO353_03500 0.30 -0.7
749,086 - AO353_03500 0.30 -1.4
749,201 + AO353_03500 0.34 -0.1
749,202 - AO353_03500 0.34 -2.0
749,202 - AO353_03500 0.34 -0.1
749,202 - AO353_03500 0.34 +2.2
749,249 - AO353_03500 0.36 -1.4
749,271 + AO353_03500 0.36 -1.7
749,271 + AO353_03500 0.36 -1.1
749,271 + AO353_03500 0.36 +0.6
749,271 + AO353_03500 0.36 -0.3
749,271 + AO353_03500 0.36 -1.0
749,272 - AO353_03500 0.36 +0.2
749,272 - AO353_03500 0.36 -1.0
749,272 - AO353_03500 0.36 +0.6
749,272 - AO353_03500 0.36 -1.3
749,272 - AO353_03500 0.36 -0.4
749,272 - +2.2
749,272 - AO353_03500 0.36 -1.3
749,272 - AO353_03500 0.36 +0.6
749,280 + AO353_03500 0.37 +0.9
749,291 + AO353_03500 0.37 -0.6
749,695 - AO353_03500 0.51 -0.4
749,952 + AO353_03500 0.60 -0.4
750,180 + AO353_03500 0.68 -2.3
750,180 + AO353_03500 0.68 +1.2
750,180 + AO353_03500 0.68 -0.6
750,258 + AO353_03500 0.71 -1.3
750,258 + AO353_03500 0.71 -2.0
750,258 + AO353_03500 0.71 +0.2
750,258 + AO353_03500 0.71 -0.6
750,258 + AO353_03500 0.71 -1.8
750,258 + AO353_03500 0.71 -1.3
750,258 + AO353_03500 0.71 +1.0
750,258 + AO353_03500 0.71 +0.4
750,258 + AO353_03500 0.71 -1.1
750,258 + AO353_03500 0.71 +0.6
750,258 + AO353_03500 0.71 -2.3
750,258 + AO353_03500 0.71 -1.3
750,258 + AO353_03500 0.71 -0.4
750,258 + AO353_03500 0.71 +0.4
750,259 - AO353_03500 0.71 +0.0
750,259 - AO353_03500 0.71 +0.9
750,259 - AO353_03500 0.71 -1.5
750,259 - AO353_03500 0.71 -0.9
750,513 + AO353_03500 0.80 +2.2
750,513 + AO353_03500 0.80 +0.1
750,513 + AO353_03500 0.80 -0.2
750,513 + AO353_03500 0.80 +1.5
750,513 + AO353_03500 0.80 -0.4
750,513 + AO353_03500 0.80 -2.3
750,513 + AO353_03500 0.80 -0.6
750,514 - AO353_03500 0.80 +0.6
750,514 - AO353_03500 0.80 -0.5
750,514 - AO353_03500 0.80 -0.4
750,514 - AO353_03500 0.80 -0.8
750,514 - AO353_03500 0.80 +0.0
750,514 - AO353_03500 0.80 -2.7
750,514 - AO353_03500 0.80 -0.7
750,579 + AO353_03500 0.82 +0.2
750,579 + AO353_03500 0.82 +0.2
750,579 + AO353_03500 0.82 -0.7
750,579 + AO353_03500 0.82 -0.1
750,579 + AO353_03500 0.82 -2.3
750,580 - AO353_03500 0.82 -1.0
750,580 - AO353_03500 0.82 +0.2
750,580 - AO353_03500 0.82 -1.8
750,580 - AO353_03500 0.82 -1.0
750,607 - AO353_03500 0.83 -2.0
750,618 + AO353_03500 0.83 +1.4
750,618 + AO353_03500 0.83 +1.2
750,618 + AO353_03500 0.83 +0.6
750,619 - AO353_03500 0.84 -1.0
750,952 - -0.6
750,973 - -0.4
751,002 + +6.1
751,002 + +4.4
751,002 + +3.7
751,003 - -0.2
751,080 + +7.0
751,080 + +6.4
751,080 + +5.2
751,080 + +6.4
751,080 + +8.8
751,081 - -2.4
751,081 - -0.6
751,091 + +7.0
751,091 + +7.6
751,091 + +7.6
751,091 + +5.8
751,091 + +7.8
751,091 + +5.7
751,091 + +8.0
751,091 + +6.6
751,091 + +7.6
751,091 + +6.7
751,091 + +6.6
751,091 + +4.0
751,091 + +10.0
751,092 - -1.0
751,092 - -1.7
751,092 - -1.8
751,092 - -2.9
751,092 - -0.8
751,092 - -1.3
751,092 - -2.0
751,092 - -1.9
751,092 - -0.8
751,146 + +9.5
751,146 + +6.2
751,147 - -1.4
751,249 + +9.0
751,249 + +8.8
751,249 + +5.6
751,249 + +8.5
751,249 + +9.3
751,249 + +6.3
751,250 - +1.0
751,250 - -0.1
751,250 - -0.4
751,250 - +0.6
751,250 - -0.6
751,250 - -0.1
751,251 + +8.0
751,252 - -1.0
751,252 - -1.3
751,281 + -1.7
751,638 - AO353_03505 0.26 +0.6
751,703 + AO353_03505 0.31 -0.4
751,704 - AO353_03505 0.31 +0.2
751,704 - AO353_03505 0.31 -1.5
751,704 - AO353_03505 0.31 -1.3
751,704 - AO353_03505 0.31 +5.6
751,771 + AO353_03505 0.36 +0.2
751,771 + AO353_03505 0.36 -1.7
751,832 + AO353_03505 0.41 +2.2
751,832 + AO353_03505 0.41 +0.2
751,833 - AO353_03505 0.41 +0.4
752,084 + AO353_03505 0.59 -1.5
752,084 + AO353_03505 0.59 -1.1
752,085 - AO353_03505 0.59 -1.3
752,085 - AO353_03505 0.59 -0.4
752,085 - AO353_03505 0.59 -1.5
752,085 - AO353_03505 0.59 -1.7

Or see this region's nucleotide sequence