Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03210

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03200 and AO353_03205 are separated by 19 nucleotidesAO353_03205 and AO353_03210 are separated by 233 nucleotidesAO353_03210 and AO353_03215 are separated by 33 nucleotidesAO353_03215 and AO353_03220 are separated by 155 nucleotides AO353_03200: AO353_03200 - RNA polymerase subunit sigma-24, at 682,238 to 683,473 _03200 AO353_03205: AO353_03205 - dehydrogenase, at 683,493 to 683,840 _03205 AO353_03210: AO353_03210 - GNAT family acetyltransferase, at 684,074 to 684,559 _03210 AO353_03215: AO353_03215 - pyridoxamine 5'-phosphate oxidase, at 684,593 to 685,198 _03215 AO353_03220: AO353_03220 - GNAT family acetyltransferase, at 685,354 to 685,851 _03220 Position (kb) 684 685Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 683.490 kb on + strandat 683.491 kb on - strandat 683.499 kb on + strandat 683.499 kb on + strandat 683.499 kb on + strandat 683.500 kb on - strandat 683.500 kb on - strandat 683.500 kb on - strandat 683.500 kb on - strandat 683.556 kb on - strand, within AO353_03205at 683.556 kb on - strand, within AO353_03205at 683.556 kb on - strand, within AO353_03205at 683.605 kb on + strand, within AO353_03205at 683.675 kb on + strand, within AO353_03205at 683.675 kb on + strand, within AO353_03205at 683.675 kb on + strand, within AO353_03205at 683.676 kb on - strand, within AO353_03205at 683.755 kb on + strand, within AO353_03205at 683.755 kb on + strand, within AO353_03205at 683.755 kb on + strand, within AO353_03205at 683.756 kb on - strand, within AO353_03205at 683.761 kb on - strand, within AO353_03205at 683.819 kb on - strandat 683.819 kb on - strandat 683.819 kb on - strandat 683.819 kb on - strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.829 kb on + strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.830 kb on - strandat 683.833 kb on + strandat 683.833 kb on + strandat 683.833 kb on + strandat 683.833 kb on + strandat 683.833 kb on + strandat 683.833 kb on + strandat 683.833 kb on + strandat 683.833 kb on + strandat 683.833 kb on + strandat 683.833 kb on + strandat 683.833 kb on + strandat 683.834 kb on - strandat 683.834 kb on - strandat 683.834 kb on - strandat 683.834 kb on - strandat 683.834 kb on - strandat 683.834 kb on - strandat 683.834 kb on - strandat 683.834 kb on - strandat 683.834 kb on - strandat 683.840 kb on + strandat 683.840 kb on + strandat 683.840 kb on + strandat 683.840 kb on + strandat 683.841 kb on - strandat 683.841 kb on - strandat 683.841 kb on - strandat 683.869 kb on + strandat 683.869 kb on + strandat 683.869 kb on + strandat 683.869 kb on + strandat 683.869 kb on + strandat 683.869 kb on + strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.870 kb on - strandat 683.968 kb on - strandat 684.003 kb on + strandat 684.003 kb on + strandat 684.004 kb on - strandat 684.008 kb on + strandat 684.008 kb on + strandat 684.008 kb on + strandat 684.009 kb on - strandat 684.009 kb on - strandat 684.009 kb on - strandat 684.009 kb on - strandat 684.009 kb on - strandat 684.334 kb on - strand, within AO353_03210at 684.365 kb on + strand, within AO353_03210at 684.365 kb on + strand, within AO353_03210at 684.476 kb on + strand, within AO353_03210at 684.476 kb on + strand, within AO353_03210at 684.476 kb on + strand, within AO353_03210at 684.477 kb on - strand, within AO353_03210at 684.477 kb on - strand, within AO353_03210at 684.512 kb on + strandat 684.513 kb on - strandat 684.513 kb on - strandat 684.626 kb on + strandat 684.767 kb on - strand, within AO353_03215at 684.826 kb on + strand, within AO353_03215at 684.830 kb on - strand, within AO353_03215at 684.830 kb on - strand, within AO353_03215at 685.022 kb on + strand, within AO353_03215at 685.022 kb on + strand, within AO353_03215at 685.022 kb on + strand, within AO353_03215at 685.023 kb on - strand, within AO353_03215at 685.023 kb on - strandat 685.042 kb on + strand, within AO353_03215at 685.043 kb on - strand, within AO353_03215at 685.076 kb on + strand, within AO353_03215at 685.077 kb on - strand, within AO353_03215at 685.154 kb on + strandat 685.154 kb on + strandat 685.154 kb on + strandat 685.154 kb on + strandat 685.155 kb on - strandat 685.155 kb on - strandat 685.155 kb on - strandat 685.194 kb on - strandat 685.194 kb on - strandat 685.194 kb on - strandat 685.196 kb on + strandat 685.196 kb on + strandat 685.196 kb on + strandat 685.197 kb on - strandat 685.235 kb on - strandat 685.296 kb on + strandat 685.296 kb on + strandat 685.297 kb on - strandat 685.297 kb on - strandat 685.305 kb on + strandat 685.305 kb on + strandat 685.306 kb on - strandat 685.408 kb on + strand, within AO353_03220at 685.408 kb on + strand, within AO353_03220at 685.418 kb on + strand, within AO353_03220at 685.419 kb on - strand, within AO353_03220at 685.419 kb on - strand, within AO353_03220at 685.439 kb on + strand, within AO353_03220at 685.440 kb on - strand, within AO353_03220at 685.440 kb on - strand, within AO353_03220at 685.440 kb on - strand, within AO353_03220at 685.447 kb on + strand, within AO353_03220at 685.447 kb on + strand, within AO353_03220at 685.447 kb on + strand, within AO353_03220at 685.447 kb on + strand, within AO353_03220at 685.447 kb on + strand, within AO353_03220at 685.447 kb on + strand, within AO353_03220at 685.447 kb on + strand, within AO353_03220at 685.447 kb on + strand, within AO353_03220at 685.447 kb on + strand, within AO353_03220at 685.447 kb on + strand, within AO353_03220at 685.448 kb on - strand, within AO353_03220at 685.448 kb on - strand, within AO353_03220at 685.448 kb on - strand, within AO353_03220at 685.448 kb on - strand, within AO353_03220at 685.448 kb on - strand, within AO353_03220at 685.448 kb on - strand, within AO353_03220at 685.474 kb on - strand, within AO353_03220

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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683,490 + +0.2
683,491 - -0.4
683,499 + -0.8
683,499 + -0.3
683,499 + -0.4
683,500 - -0.6
683,500 - +0.4
683,500 - -1.2
683,500 - +0.2
683,556 - AO353_03205 0.18 -0.4
683,556 - AO353_03205 0.18 +0.2
683,556 - AO353_03205 0.18 -0.3
683,605 + AO353_03205 0.32 +1.2
683,675 + AO353_03205 0.52 -0.3
683,675 + AO353_03205 0.52 -0.3
683,675 + AO353_03205 0.52 -0.1
683,676 - AO353_03205 0.53 -0.4
683,755 + AO353_03205 0.75 -0.4
683,755 + AO353_03205 0.75 +0.6
683,755 + AO353_03205 0.75 +0.8
683,756 - AO353_03205 0.76 -0.3
683,761 - AO353_03205 0.77 -0.3
683,819 - +0.2
683,819 - -0.7
683,819 - +0.9
683,819 - +0.6
683,829 + +1.2
683,829 + +0.7
683,829 + +1.2
683,829 + -1.1
683,829 + +0.0
683,829 + -0.6
683,829 + -0.6
683,829 + -0.5
683,829 + +0.1
683,829 + +0.4
683,829 + +0.2
683,829 + +1.2
683,829 + +0.7
683,829 + +0.5
683,829 + -0.3
683,829 + -0.6
683,830 - +1.6
683,830 - -2.0
683,830 - +0.3
683,830 - +0.7
683,830 - -0.8
683,830 - +2.5
683,830 - -1.4
683,830 - +0.6
683,830 - +0.9
683,830 - +2.2
683,830 - +0.5
683,830 - -0.8
683,830 - +0.6
683,830 - -1.3
683,830 - +0.2
683,833 + -1.4
683,833 + -0.8
683,833 + -0.6
683,833 + +0.9
683,833 + +0.4
683,833 + -0.3
683,833 + -0.1
683,833 + -0.4
683,833 + -1.0
683,833 + +0.6
683,833 + +0.6
683,834 - -0.5
683,834 - +0.4
683,834 - +0.6
683,834 - -0.2
683,834 - -1.2
683,834 - -0.1
683,834 - -1.4
683,834 - -1.0
683,834 - +1.4
683,840 + +1.6
683,840 + -1.4
683,840 + -1.3
683,840 + -0.6
683,841 - -1.1
683,841 - -0.7
683,841 - -0.8
683,869 + +1.2
683,869 + +0.6
683,869 + +2.2
683,869 + -3.3
683,869 + -1.2
683,869 + +1.1
683,870 - -0.8
683,870 - -0.7
683,870 - -0.8
683,870 - +1.2
683,870 - +0.6
683,870 - -0.6
683,870 - +0.6
683,870 - +1.6
683,870 - -0.6
683,870 - -1.5
683,870 - -0.6
683,870 - +0.4
683,870 - -0.5
683,870 - -0.3
683,870 - -0.8
683,968 - -0.6
684,003 + -3.0
684,003 + -0.4
684,004 - +0.4
684,008 + -0.4
684,008 + +0.0
684,008 + +0.0
684,009 - -1.7
684,009 - -0.7
684,009 - +0.6
684,009 - +0.2
684,009 - -0.3
684,334 - AO353_03210 0.53 +1.4
684,365 + AO353_03210 0.60 +0.6
684,365 + AO353_03210 0.60 +0.0
684,476 + AO353_03210 0.83 -0.2
684,476 + AO353_03210 0.83 +0.6
684,476 + AO353_03210 0.83 +0.0
684,477 - AO353_03210 0.83 +0.5
684,477 - AO353_03210 0.83 +1.5
684,512 + -1.8
684,513 - +0.0
684,513 - -0.1
684,626 + +0.7
684,767 - AO353_03215 0.29 +0.2
684,826 + AO353_03215 0.38 +1.3
684,830 - AO353_03215 0.39 +3.2
684,830 - AO353_03215 0.39 +0.4
685,022 + AO353_03215 0.71 +2.5
685,022 + AO353_03215 0.71 -0.6
685,022 + AO353_03215 0.71 +1.3
685,023 - AO353_03215 0.71 +1.0
685,023 - +0.6
685,042 + AO353_03215 0.74 -0.8
685,043 - AO353_03215 0.74 -1.0
685,076 + AO353_03215 0.80 -0.4
685,077 - AO353_03215 0.80 +1.0
685,154 + +0.2
685,154 + -0.4
685,154 + +0.1
685,154 + -1.0
685,155 - -0.1
685,155 - +2.2
685,155 - +0.2
685,194 - -0.1
685,194 - -1.2
685,194 - -0.9
685,196 + -0.8
685,196 + +1.0
685,196 + +1.2
685,197 - +0.4
685,235 - +0.6
685,296 + -0.6
685,296 + +0.9
685,297 - -0.1
685,297 - +0.8
685,305 + +0.3
685,305 + -0.2
685,306 - +0.5
685,408 + AO353_03220 0.11 +0.0
685,408 + AO353_03220 0.11 -1.0
685,418 + AO353_03220 0.13 +1.2
685,419 - AO353_03220 0.13 +0.0
685,419 - AO353_03220 0.13 +1.9
685,439 + AO353_03220 0.17 -1.1
685,440 - AO353_03220 0.17 -0.1
685,440 - AO353_03220 0.17 +0.2
685,440 - AO353_03220 0.17 +2.5
685,447 + AO353_03220 0.19 -0.1
685,447 + AO353_03220 0.19 -1.6
685,447 + AO353_03220 0.19 -1.0
685,447 + AO353_03220 0.19 -0.6
685,447 + AO353_03220 0.19 -0.4
685,447 + AO353_03220 0.19 -0.4
685,447 + AO353_03220 0.19 -1.3
685,447 + AO353_03220 0.19 -1.7
685,447 + AO353_03220 0.19 +0.4
685,447 + AO353_03220 0.19 -0.4
685,448 - AO353_03220 0.19 -0.7
685,448 - AO353_03220 0.19 +1.7
685,448 - AO353_03220 0.19 +0.2
685,448 - AO353_03220 0.19 -0.4
685,448 - AO353_03220 0.19 -0.4
685,448 - AO353_03220 0.19 +0.3
685,474 - AO353_03220 0.24 +0.5

Or see this region's nucleotide sequence