Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03185 and AO353_03190 are separated by 46 nucleotides AO353_03190 and AO353_03195 are separated by 89 nucleotides AO353_03195 and AO353_03200 are separated by 117 nucleotides
AO353_03185: AO353_03185 - short-chain dehydrogenase, at 679,934 to 680,692
_03185
AO353_03190: AO353_03190 - hypothetical protein, at 680,739 to 681,176
_03190
AO353_03195: AO353_03195 - transcriptional regulator, at 681,266 to 682,120
_03195
AO353_03200: AO353_03200 - RNA polymerase subunit sigma-24, at 682,238 to 683,473
_03200
Position (kb)
681
682
683 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 680.356 kb on + strand, within AO353_03185 at 680.356 kb on + strand, within AO353_03185 at 680.356 kb on + strand, within AO353_03185 at 680.357 kb on - strand, within AO353_03185 at 680.402 kb on + strand, within AO353_03185 at 680.403 kb on - strand, within AO353_03185 at 680.403 kb on - strand, within AO353_03185 at 680.403 kb on - strand, within AO353_03185 at 680.403 kb on - strand, within AO353_03185 at 680.483 kb on - strand, within AO353_03185 at 680.569 kb on + strand, within AO353_03185 at 680.569 kb on + strand, within AO353_03185 at 680.569 kb on + strand, within AO353_03185 at 680.691 kb on - strand at 680.740 kb on + strand at 680.740 kb on + strand at 680.763 kb on + strand at 680.788 kb on + strand, within AO353_03190 at 680.789 kb on - strand, within AO353_03190 at 680.789 kb on - strand, within AO353_03190 at 680.800 kb on + strand, within AO353_03190 at 680.801 kb on - strand, within AO353_03190 at 680.801 kb on - strand, within AO353_03190 at 680.801 kb on - strand, within AO353_03190 at 680.806 kb on + strand, within AO353_03190 at 680.806 kb on + strand, within AO353_03190 at 680.806 kb on + strand, within AO353_03190 at 680.806 kb on + strand, within AO353_03190 at 680.806 kb on + strand, within AO353_03190 at 680.806 kb on + strand, within AO353_03190 at 680.806 kb on + strand, within AO353_03190 at 680.806 kb on + strand, within AO353_03190 at 680.806 kb on + strand, within AO353_03190 at 680.806 kb on + strand, within AO353_03190 at 680.806 kb on + strand, within AO353_03190 at 680.806 kb on + strand, within AO353_03190 at 680.807 kb on - strand, within AO353_03190 at 680.807 kb on - strand, within AO353_03190 at 680.807 kb on - strand, within AO353_03190 at 680.807 kb on - strand, within AO353_03190 at 680.807 kb on - strand, within AO353_03190 at 680.807 kb on - strand, within AO353_03190 at 680.807 kb on - strand, within AO353_03190 at 680.807 kb on - strand, within AO353_03190 at 680.807 kb on - strand, within AO353_03190 at 680.807 kb on - strand, within AO353_03190 at 680.813 kb on - strand, within AO353_03190 at 681.101 kb on + strand, within AO353_03190 at 681.101 kb on + strand, within AO353_03190 at 681.101 kb on + strand, within AO353_03190 at 681.102 kb on - strand, within AO353_03190 at 681.102 kb on - strand, within AO353_03190 at 681.102 kb on - strand, within AO353_03190 at 681.102 kb on - strand, within AO353_03190 at 681.102 kb on - strand, within AO353_03190 at 681.234 kb on + strand at 681.569 kb on + strand, within AO353_03195 at 681.569 kb on + strand, within AO353_03195 at 681.569 kb on + strand, within AO353_03195 at 681.570 kb on - strand, within AO353_03195 at 681.570 kb on - strand, within AO353_03195 at 681.570 kb on - strand, within AO353_03195 at 681.570 kb on - strand, within AO353_03195 at 681.570 kb on - strand, within AO353_03195 at 681.570 kb on - strand, within AO353_03195 at 681.723 kb on - strand, within AO353_03195 at 681.876 kb on - strand, within AO353_03195 at 681.917 kb on + strand, within AO353_03195 at 681.917 kb on + strand, within AO353_03195 at 682.183 kb on - strand at 682.188 kb on + strand at 682.189 kb on - strand at 682.206 kb on + strand at 682.206 kb on + strand at 682.212 kb on + strand at 682.213 kb on - strand at 682.213 kb on - strand at 682.223 kb on + strand at 682.223 kb on + strand at 682.224 kb on - strand at 682.224 kb on - strand at 682.224 kb on - strand at 682.224 kb on - strand at 682.224 kb on - strand at 682.224 kb on - strand at 682.224 kb on - strand at 682.224 kb on - strand at 682.314 kb on + strand at 682.386 kb on + strand, within AO353_03200 at 682.386 kb on + strand, within AO353_03200 at 682.386 kb on + strand, within AO353_03200 at 682.387 kb on - strand, within AO353_03200 at 682.387 kb on - strand, within AO353_03200 at 682.521 kb on + strand, within AO353_03200 at 682.521 kb on + strand, within AO353_03200 at 682.521 kb on + strand, within AO353_03200 at 682.522 kb on - strand, within AO353_03200 at 682.522 kb on - strand, within AO353_03200 at 682.522 kb on - strand, within AO353_03200 at 682.522 kb on - strand, within AO353_03200 at 682.522 kb on - strand, within AO353_03200 at 682.605 kb on + strand, within AO353_03200 at 682.605 kb on + strand, within AO353_03200 at 682.673 kb on - strand, within AO353_03200 at 682.881 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.903 kb on - strand, within AO353_03200 at 682.916 kb on + strand, within AO353_03200 at 682.916 kb on + strand, within AO353_03200 at 682.916 kb on + strand, within AO353_03200 at 682.916 kb on + strand, within AO353_03200 at 682.917 kb on - strand, within AO353_03200 at 682.917 kb on - strand, within AO353_03200 at 682.917 kb on - strand, within AO353_03200
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 680,356 + AO353_03185 0.56 -0.6 680,356 + AO353_03185 0.56 -0.0 680,356 + AO353_03185 0.56 +2.2 680,357 - AO353_03185 0.56 +0.6 680,402 + AO353_03185 0.62 +0.3 680,403 - AO353_03185 0.62 +0.3 680,403 - AO353_03185 0.62 -1.5 680,403 - AO353_03185 0.62 -0.4 680,403 - AO353_03185 0.62 +0.4 680,483 - AO353_03185 0.72 -0.4 680,569 + AO353_03185 0.84 +0.4 680,569 + AO353_03185 0.84 +0.2 680,569 + AO353_03185 0.84 +0.2 680,691 - -0.2 680,740 + -2.0 680,740 + -0.2 680,763 + -0.3 680,788 + AO353_03190 0.11 -0.6 680,789 - AO353_03190 0.11 -0.1 680,789 - AO353_03190 0.11 -0.6 680,800 + AO353_03190 0.14 -1.1 680,801 - AO353_03190 0.14 +0.2 680,801 - AO353_03190 0.14 +0.0 680,801 - AO353_03190 0.14 +0.5 680,806 + AO353_03190 0.15 +0.9 680,806 + AO353_03190 0.15 +0.3 680,806 + AO353_03190 0.15 +0.7 680,806 + AO353_03190 0.15 -1.1 680,806 + AO353_03190 0.15 +1.6 680,806 + AO353_03190 0.15 +1.4 680,806 + AO353_03190 0.15 -1.4 680,806 + AO353_03190 0.15 -2.3 680,806 + AO353_03190 0.15 +0.7 680,806 + AO353_03190 0.15 +0.3 680,806 + AO353_03190 0.15 +0.9 680,806 + AO353_03190 0.15 -0.7 680,807 - AO353_03190 0.16 +0.2 680,807 - AO353_03190 0.16 -0.6 680,807 - AO353_03190 0.16 +0.2 680,807 - AO353_03190 0.16 +0.3 680,807 - AO353_03190 0.16 +0.0 680,807 - AO353_03190 0.16 -1.3 680,807 - AO353_03190 0.16 +0.6 680,807 - AO353_03190 0.16 +1.0 680,807 - AO353_03190 0.16 +0.4 680,807 - AO353_03190 0.16 +1.6 680,813 - AO353_03190 0.17 +1.4 681,101 + AO353_03190 0.83 +0.2 681,101 + AO353_03190 0.83 -1.6 681,101 + AO353_03190 0.83 -0.3 681,102 - AO353_03190 0.83 +0.6 681,102 - AO353_03190 0.83 +0.0 681,102 - AO353_03190 0.83 +2.2 681,102 - AO353_03190 0.83 +1.0 681,102 - AO353_03190 0.83 -3.2 681,234 + -0.1 681,569 + AO353_03195 0.35 -1.2 681,569 + AO353_03195 0.35 -0.9 681,569 + AO353_03195 0.35 -0.4 681,570 - AO353_03195 0.36 -3.1 681,570 - AO353_03195 0.36 -0.8 681,570 - AO353_03195 0.36 -1.7 681,570 - AO353_03195 0.36 -0.7 681,570 - AO353_03195 0.36 -0.6 681,570 - AO353_03195 0.36 -0.2 681,723 - AO353_03195 0.53 +0.6 681,876 - AO353_03195 0.71 +1.2 681,917 + AO353_03195 0.76 -0.7 681,917 + AO353_03195 0.76 -0.1 682,183 - -1.1 682,188 + -0.8 682,189 - +0.6 682,206 + -0.2 682,206 + -0.1 682,212 + -0.1 682,213 - +0.6 682,213 - +0.7 682,223 + +0.2 682,223 + +1.2 682,224 - +0.2 682,224 - +0.2 682,224 - -0.5 682,224 - -1.1 682,224 - +0.2 682,224 - -0.8 682,224 - -0.3 682,224 - -0.6 682,314 + +1.2 682,386 + AO353_03200 0.12 -1.4 682,386 + AO353_03200 0.12 +0.0 682,386 + AO353_03200 0.12 +0.3 682,387 - AO353_03200 0.12 +0.8 682,387 - AO353_03200 0.12 -0.4 682,521 + AO353_03200 0.23 +1.5 682,521 + AO353_03200 0.23 +0.8 682,521 + AO353_03200 0.23 +0.4 682,522 - AO353_03200 0.23 -0.1 682,522 - AO353_03200 0.23 -0.3 682,522 - AO353_03200 0.23 +0.2 682,522 - AO353_03200 0.23 +1.4 682,522 - AO353_03200 0.23 -0.5 682,605 + AO353_03200 0.30 +0.2 682,605 + AO353_03200 0.30 -0.6 682,673 - AO353_03200 0.35 +0.1 682,881 + AO353_03200 0.52 +1.2 682,902 + AO353_03200 0.54 +0.9 682,902 + AO353_03200 0.54 +0.6 682,902 + AO353_03200 0.54 -1.4 682,902 + AO353_03200 0.54 -0.3 682,902 + AO353_03200 0.54 -0.3 682,902 + AO353_03200 0.54 -0.9 682,902 + AO353_03200 0.54 -1.9 682,903 - AO353_03200 0.54 +0.5 682,916 + AO353_03200 0.55 -0.8 682,916 + AO353_03200 0.55 -0.8 682,916 + AO353_03200 0.55 +1.2 682,916 + AO353_03200 0.55 +2.2 682,917 - AO353_03200 0.55 +0.5 682,917 - AO353_03200 0.55 -0.8 682,917 - AO353_03200 0.55 -0.5
Or see this region's nucleotide sequence