Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02810

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_02805 and AO353_02810 are separated by 30 nucleotidesAO353_02810 and AO353_02815 overlap by 4 nucleotidesAO353_02815 and AO353_02820 are separated by 239 nucleotides AO353_02805: AO353_02805 - AraC family transcriptional regulator, at 594,667 to 595,665 _02805 AO353_02810: AO353_02810 - histidine kinase, at 595,696 to 597,042 _02810 AO353_02815: AO353_02815 - transcriptional regulator, at 597,039 to 597,716 _02815 AO353_02820: AO353_02820 - dienelactone hydrolase, at 597,956 to 598,747 _02820 Position (kb) 595 596 597 598Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 594.733 kb on + strandat 594.734 kb on - strandat 594.862 kb on + strand, within AO353_02805at 594.863 kb on - strand, within AO353_02805at 594.966 kb on - strand, within AO353_02805at 594.966 kb on - strand, within AO353_02805at 594.968 kb on + strand, within AO353_02805at 594.968 kb on + strand, within AO353_02805at 594.968 kb on + strand, within AO353_02805at 594.973 kb on + strand, within AO353_02805at 594.973 kb on + strand, within AO353_02805at 594.973 kb on + strand, within AO353_02805at 594.974 kb on - strand, within AO353_02805at 594.974 kb on - strand, within AO353_02805at 594.974 kb on - strand, within AO353_02805at 594.974 kb on - strand, within AO353_02805at 594.974 kb on - strand, within AO353_02805at 594.975 kb on + strand, within AO353_02805at 594.975 kb on + strand, within AO353_02805at 594.976 kb on - strand, within AO353_02805at 594.976 kb on - strand, within AO353_02805at 594.976 kb on - strand, within AO353_02805at 594.976 kb on - strand, within AO353_02805at 594.980 kb on + strand, within AO353_02805at 594.980 kb on + strand, within AO353_02805at 594.980 kb on + strand, within AO353_02805at 594.980 kb on + strand, within AO353_02805at 594.980 kb on + strand, within AO353_02805at 594.981 kb on - strand, within AO353_02805at 594.981 kb on - strand, within AO353_02805at 594.981 kb on - strand, within AO353_02805at 594.981 kb on - strand, within AO353_02805at 594.981 kb on - strand, within AO353_02805at 595.163 kb on - strand, within AO353_02805at 595.190 kb on - strand, within AO353_02805at 595.190 kb on - strand, within AO353_02805at 595.290 kb on + strand, within AO353_02805at 595.290 kb on + strand, within AO353_02805at 595.290 kb on + strand, within AO353_02805at 595.291 kb on - strand, within AO353_02805at 595.291 kb on - strand, within AO353_02805at 595.291 kb on - strand, within AO353_02805at 595.370 kb on + strand, within AO353_02805at 595.370 kb on + strand, within AO353_02805at 595.370 kb on + strand, within AO353_02805at 595.370 kb on + strand, within AO353_02805at 595.371 kb on - strand, within AO353_02805at 595.528 kb on + strand, within AO353_02805at 595.528 kb on + strand, within AO353_02805at 595.528 kb on + strand, within AO353_02805at 595.529 kb on - strand, within AO353_02805at 595.529 kb on - strand, within AO353_02805at 595.663 kb on + strandat 595.663 kb on + strandat 595.664 kb on - strandat 595.664 kb on - strandat 595.664 kb on - strandat 595.664 kb on - strandat 595.664 kb on - strandat 595.664 kb on - strandat 595.664 kb on - strandat 595.664 kb on - strandat 595.664 kb on - strandat 595.770 kb on - strandat 596.024 kb on + strand, within AO353_02810at 596.024 kb on + strand, within AO353_02810at 596.024 kb on + strand, within AO353_02810at 596.024 kb on + strand, within AO353_02810at 596.024 kb on + strand, within AO353_02810at 596.025 kb on - strand, within AO353_02810at 596.025 kb on - strand, within AO353_02810at 596.025 kb on - strand, within AO353_02810at 596.148 kb on + strand, within AO353_02810at 596.148 kb on + strand, within AO353_02810at 596.149 kb on - strand, within AO353_02810at 596.175 kb on - strand, within AO353_02810at 596.543 kb on + strand, within AO353_02810at 596.579 kb on + strand, within AO353_02810at 596.579 kb on + strand, within AO353_02810at 596.607 kb on + strand, within AO353_02810at 596.626 kb on - strand, within AO353_02810at 596.654 kb on + strand, within AO353_02810at 596.654 kb on + strand, within AO353_02810at 596.654 kb on + strand, within AO353_02810at 596.654 kb on + strand, within AO353_02810at 596.655 kb on - strand, within AO353_02810at 596.655 kb on - strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.790 kb on - strand, within AO353_02810at 596.790 kb on - strand, within AO353_02810at 596.790 kb on - strand, within AO353_02810at 596.790 kb on - strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.796 kb on - strand, within AO353_02810at 596.796 kb on - strand, within AO353_02810at 596.796 kb on - strand, within AO353_02810at 596.887 kb on + strand, within AO353_02810at 596.887 kb on + strand, within AO353_02810at 597.064 kb on + strandat 597.064 kb on + strandat 597.065 kb on - strandat 597.238 kb on + strand, within AO353_02815at 597.238 kb on + strand, within AO353_02815at 597.239 kb on - strand, within AO353_02815at 597.239 kb on - strand, within AO353_02815at 597.239 kb on - strand, within AO353_02815at 597.260 kb on - strand, within AO353_02815at 597.350 kb on + strand, within AO353_02815at 597.424 kb on + strand, within AO353_02815at 597.424 kb on + strand, within AO353_02815at 597.424 kb on + strand, within AO353_02815at 597.425 kb on - strand, within AO353_02815at 597.425 kb on - strandat 597.425 kb on - strand, within AO353_02815at 597.425 kb on - strand, within AO353_02815at 597.604 kb on + strand, within AO353_02815at 597.604 kb on + strand, within AO353_02815at 597.604 kb on + strand, within AO353_02815at 597.605 kb on - strand, within AO353_02815at 597.605 kb on - strand, within AO353_02815at 597.605 kb on - strandat 597.605 kb on - strand, within AO353_02815at 597.752 kb on + strandat 597.752 kb on + strandat 597.753 kb on - strandat 597.753 kb on - strandat 597.771 kb on + strandat 597.771 kb on + strandat 597.771 kb on + strandat 597.771 kb on + strandat 597.771 kb on + strandat 597.772 kb on - strandat 597.772 kb on - strandat 597.772 kb on - strandat 597.772 kb on - strandat 597.774 kb on + strandat 597.774 kb on + strandat 597.774 kb on + strandat 597.774 kb on + strandat 597.775 kb on - strandat 597.775 kb on - strandat 597.775 kb on - strandat 597.852 kb on + strandat 597.853 kb on - strandat 597.853 kb on - strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.882 kb on - strandat 597.920 kb on + strandat 597.920 kb on + strandat 597.921 kb on - strandat 597.940 kb on + strandat 597.940 kb on + strandat 597.941 kb on - strandat 597.941 kb on - strandat 597.963 kb on + strandat 597.964 kb on - strandat 597.981 kb on + strandat 597.981 kb on + strandat 597.982 kb on - strandat 598.034 kb on + strandat 598.034 kb on + strandat 598.034 kb on + strandat 598.034 kb on + strandat 598.035 kb on - strandat 598.035 kb on - strandat 598.035 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
594,733 + -0.5
594,734 - -1.5
594,862 + AO353_02805 0.20 +0.7
594,863 - AO353_02805 0.20 -0.3
594,966 - AO353_02805 0.30 +1.0
594,966 - AO353_02805 0.30 +0.5
594,968 + AO353_02805 0.30 +0.8
594,968 + AO353_02805 0.30 -0.5
594,968 + AO353_02805 0.30 +0.0
594,973 + AO353_02805 0.31 -0.0
594,973 + AO353_02805 0.31 +0.3
594,973 + AO353_02805 0.31 -0.8
594,974 - AO353_02805 0.31 +1.4
594,974 - AO353_02805 0.31 +1.3
594,974 - AO353_02805 0.31 -0.8
594,974 - AO353_02805 0.31 -1.2
594,974 - AO353_02805 0.31 -0.3
594,975 + AO353_02805 0.31 +0.5
594,975 + AO353_02805 0.31 +0.1
594,976 - AO353_02805 0.31 +0.5
594,976 - AO353_02805 0.31 -0.5
594,976 - AO353_02805 0.31 -0.8
594,976 - AO353_02805 0.31 +1.3
594,980 + AO353_02805 0.31 -1.2
594,980 + AO353_02805 0.31 +0.3
594,980 + AO353_02805 0.31 -1.0
594,980 + AO353_02805 0.31 -1.8
594,980 + AO353_02805 0.31 -1.0
594,981 - AO353_02805 0.31 -0.6
594,981 - AO353_02805 0.31 -0.6
594,981 - AO353_02805 0.31 +1.0
594,981 - AO353_02805 0.31 -0.7
594,981 - AO353_02805 0.31 -0.2
595,163 - AO353_02805 0.50 -0.2
595,190 - AO353_02805 0.52 -2.0
595,190 - AO353_02805 0.52 -1.5
595,290 + AO353_02805 0.62 -1.7
595,290 + AO353_02805 0.62 +2.1
595,290 + AO353_02805 0.62 +0.7
595,291 - AO353_02805 0.62 -0.0
595,291 - AO353_02805 0.62 +0.0
595,291 - AO353_02805 0.62 -0.2
595,370 + AO353_02805 0.70 +0.4
595,370 + AO353_02805 0.70 -1.0
595,370 + AO353_02805 0.70 -0.6
595,370 + AO353_02805 0.70 +0.5
595,371 - AO353_02805 0.70 +1.1
595,528 + AO353_02805 0.86 -0.5
595,528 + AO353_02805 0.86 -0.9
595,528 + AO353_02805 0.86 -0.9
595,529 - AO353_02805 0.86 +1.1
595,529 - AO353_02805 0.86 -0.5
595,663 + -0.5
595,663 + -0.8
595,664 - -0.1
595,664 - -0.2
595,664 - -0.5
595,664 - +0.7
595,664 - -1.1
595,664 - -0.0
595,664 - -0.5
595,664 - +3.1
595,664 - -0.7
595,770 - -1.7
596,024 + AO353_02810 0.24 -0.2
596,024 + AO353_02810 0.24 -0.5
596,024 + AO353_02810 0.24 +0.1
596,024 + AO353_02810 0.24 -1.0
596,024 + AO353_02810 0.24 -0.2
596,025 - AO353_02810 0.24 +2.1
596,025 - AO353_02810 0.24 +0.1
596,025 - AO353_02810 0.24 +0.5
596,148 + AO353_02810 0.34 -1.0
596,148 + AO353_02810 0.34 -0.7
596,149 - AO353_02810 0.34 -0.5
596,175 - AO353_02810 0.36 -0.2
596,543 + AO353_02810 0.63 -2.3
596,579 + AO353_02810 0.66 -1.3
596,579 + AO353_02810 0.66 -1.6
596,607 + AO353_02810 0.68 -0.7
596,626 - AO353_02810 0.69 -1.0
596,654 + AO353_02810 0.71 -0.6
596,654 + AO353_02810 0.71 -0.5
596,654 + AO353_02810 0.71 -0.2
596,654 + AO353_02810 0.71 +0.3
596,655 - AO353_02810 0.71 -1.1
596,655 - AO353_02810 0.71 -1.0
596,789 + AO353_02810 0.81 -0.7
596,789 + AO353_02810 0.81 -0.9
596,789 + AO353_02810 0.81 -1.3
596,789 + AO353_02810 0.81 -0.2
596,789 + AO353_02810 0.81 -0.2
596,789 + AO353_02810 0.81 -2.0
596,789 + AO353_02810 0.81 -0.8
596,789 + AO353_02810 0.81 -0.3
596,789 + AO353_02810 0.81 -2.6
596,790 - AO353_02810 0.81 -0.7
596,790 - AO353_02810 0.81 -0.3
596,790 - AO353_02810 0.81 -1.2
596,790 - AO353_02810 0.81 -2.0
596,795 + AO353_02810 0.82 -1.3
596,795 + AO353_02810 0.82 -0.3
596,795 + AO353_02810 0.82 -0.7
596,795 + AO353_02810 0.82 -3.0
596,795 + AO353_02810 0.82 -1.3
596,796 - AO353_02810 0.82 -0.5
596,796 - AO353_02810 0.82 -0.2
596,796 - AO353_02810 0.82 -1.7
596,887 + AO353_02810 0.88 -0.9
596,887 + AO353_02810 0.88 +0.3
597,064 + -0.7
597,064 + +0.6
597,065 - +1.3
597,238 + AO353_02815 0.29 +0.6
597,238 + AO353_02815 0.29 -0.9
597,239 - AO353_02815 0.29 -0.8
597,239 - AO353_02815 0.29 +1.0
597,239 - AO353_02815 0.29 -1.0
597,260 - AO353_02815 0.33 -1.4
597,350 + AO353_02815 0.46 +1.5
597,424 + AO353_02815 0.57 +0.1
597,424 + AO353_02815 0.57 -0.2
597,424 + AO353_02815 0.57 +0.6
597,425 - AO353_02815 0.57 +0.1
597,425 - -0.4
597,425 - AO353_02815 0.57 -0.4
597,425 - AO353_02815 0.57 +1.3
597,604 + AO353_02815 0.83 -0.7
597,604 + AO353_02815 0.83 -1.3
597,604 + AO353_02815 0.83 +1.4
597,605 - AO353_02815 0.83 +0.6
597,605 - AO353_02815 0.83 +1.1
597,605 - +1.6
597,605 - AO353_02815 0.83 +0.4
597,752 + +2.9
597,752 + +1.1
597,753 - +0.4
597,753 - +1.2
597,771 + -1.0
597,771 + +0.9
597,771 + +2.1
597,771 + -0.4
597,771 + -1.7
597,772 - -1.7
597,772 - -0.4
597,772 - -0.7
597,772 - -1.0
597,774 + +0.8
597,774 + -0.0
597,774 + -0.6
597,774 + -2.0
597,775 - -0.8
597,775 - -0.2
597,775 - +0.7
597,852 + -1.7
597,853 - -0.0
597,853 - +0.4
597,876 + -1.2
597,876 + +0.6
597,876 + -1.0
597,876 + -1.4
597,876 + +0.6
597,876 + -0.3
597,876 + -0.7
597,876 + -0.3
597,876 + -0.7
597,876 + +0.6
597,876 + -0.1
597,876 + -1.7
597,876 + -1.6
597,877 - -0.9
597,877 - +0.7
597,877 - +0.1
597,877 - -0.2
597,877 - -0.0
597,877 - +0.1
597,877 - -1.4
597,877 - +0.3
597,877 - +0.1
597,877 - -0.2
597,877 - +0.6
597,877 - -0.2
597,882 - +1.2
597,920 + -1.0
597,920 + -0.3
597,921 - -1.0
597,940 + +0.4
597,940 + -0.9
597,941 - -2.2
597,941 - +1.1
597,963 + +1.0
597,964 - +0.0
597,981 + -0.4
597,981 + +0.1
597,982 - -0.2
598,034 + -0.4
598,034 + -0.2
598,034 + -0.2
598,034 + +1.3
598,035 - -0.7
598,035 - +0.7
598,035 - +1.1

Or see this region's nucleotide sequence