Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02330 and AO353_02335 are separated by 121 nucleotides AO353_02335 and AO353_02340 are separated by 51 nucleotides
AO353_02330: AO353_02330 - allantoicase, at 494,981 to 495,976
_02330
AO353_02335: AO353_02335 - ureidoglycolate hydrolase, at 496,098 to 496,601
_02335
AO353_02340: AO353_02340 - hypothetical protein, at 496,653 to 497,960
_02340
Position (kb) 496
497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 495.189 kb on - strand, within AO353_02330 at 495.270 kb on - strand, within AO353_02330 at 495.435 kb on - strand, within AO353_02330 at 495.467 kb on + strand, within AO353_02330 at 495.468 kb on - strand, within AO353_02330 at 495.616 kb on + strand, within AO353_02330 at 495.617 kb on - strand, within AO353_02330 at 495.955 kb on - strand at 495.955 kb on - strand at 495.974 kb on + strand at 495.974 kb on + strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 496.019 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.051 kb on - strand at 496.051 kb on - strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.405 kb on + strand, within AO353_02335 at 496.406 kb on - strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.452 kb on - strand, within AO353_02335 at 496.452 kb on - strand, within AO353_02335 at 496.452 kb on - strand, within AO353_02335 at 496.452 kb on - strand, within AO353_02335 at 496.455 kb on + strand, within AO353_02335 at 496.455 kb on + strand, within AO353_02335 at 496.455 kb on + strand, within AO353_02335 at 496.455 kb on + strand, within AO353_02335 at 496.456 kb on - strand, within AO353_02335 at 496.541 kb on + strand, within AO353_02335 at 496.541 kb on + strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.599 kb on + strand at 496.599 kb on + strand at 496.599 kb on + strand at 496.599 kb on + strand at 496.600 kb on - strand at 496.600 kb on - strand at 496.600 kb on - strand at 496.645 kb on + strand at 496.646 kb on - strand at 496.740 kb on + strand at 496.740 kb on + strand at 496.740 kb on + strand at 496.740 kb on + strand at 496.741 kb on - strand at 496.741 kb on - strand at 496.741 kb on - strand at 496.741 kb on - strand at 496.741 kb on - strand at 496.830 kb on + strand, within AO353_02340 at 496.830 kb on + strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.845 kb on + strand, within AO353_02340 at 496.846 kb on - strand, within AO353_02340 at 496.846 kb on - strand, within AO353_02340 at 496.902 kb on + strand, within AO353_02340 at 496.902 kb on + strand, within AO353_02340 at 496.902 kb on + strand, within AO353_02340 at 496.902 kb on + strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.947 kb on + strand, within AO353_02340 at 496.947 kb on + strand, within AO353_02340 at 496.948 kb on - strand, within AO353_02340 at 496.965 kb on + strand, within AO353_02340 at 496.965 kb on + strand, within AO353_02340 at 496.965 kb on + strand, within AO353_02340 at 496.965 kb on + strand, within AO353_02340 at 496.966 kb on - strand, within AO353_02340 at 497.050 kb on - strand, within AO353_02340 at 497.078 kb on + strand, within AO353_02340 at 497.079 kb on - strand, within AO353_02340 at 497.133 kb on + strand, within AO353_02340 at 497.133 kb on + strand, within AO353_02340 at 497.169 kb on + strand, within AO353_02340 at 497.170 kb on - strand, within AO353_02340 at 497.170 kb on - strand, within AO353_02340 at 497.211 kb on - strand, within AO353_02340 at 497.328 kb on + strand, within AO353_02340 at 497.328 kb on + strand, within AO353_02340 at 497.328 kb on + strand, within AO353_02340 at 497.328 kb on + strand, within AO353_02340 at 497.328 kb on + strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.382 kb on + strand, within AO353_02340 at 497.382 kb on + strand, within AO353_02340 at 497.383 kb on - strand, within AO353_02340 at 497.383 kb on - strand, within AO353_02340 at 497.383 kb on - strand, within AO353_02340 at 497.395 kb on - strand, within AO353_02340 at 497.448 kb on + strand, within AO353_02340 at 497.448 kb on + strand, within AO353_02340 at 497.448 kb on + strand, within AO353_02340 at 497.448 kb on + strand, within AO353_02340 at 497.448 kb on + strand, within AO353_02340 at 497.449 kb on - strand, within AO353_02340 at 497.526 kb on + strand, within AO353_02340 at 497.526 kb on + strand, within AO353_02340 at 497.527 kb on - strand, within AO353_02340
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 495,189 - AO353_02330 0.21 -1.1 495,270 - AO353_02330 0.29 +0.3 495,435 - AO353_02330 0.46 -0.4 495,467 + AO353_02330 0.49 +0.2 495,468 - AO353_02330 0.49 -0.9 495,616 + AO353_02330 0.64 +1.1 495,617 - AO353_02330 0.64 -1.6 495,955 - -0.6 495,955 - +0.6 495,974 + -0.4 495,974 + +1.7 495,975 - +0.5 495,975 - -0.4 495,975 - +2.8 495,975 - -0.2 495,975 - +0.1 495,975 - -0.2 495,975 - +0.4 495,988 + -0.1 495,988 + -0.1 495,988 + +2.1 495,988 + -0.9 495,988 + -0.7 495,988 + +2.1 495,988 + +0.5 495,989 - -1.6 495,989 - -0.7 495,989 - +0.7 495,989 - -2.1 495,989 - -0.2 495,989 - +0.6 495,989 - +0.1 496,019 + -0.6 496,050 + +0.8 496,050 + -0.1 496,050 + +0.4 496,050 + -0.3 496,050 + -0.5 496,050 + +0.5 496,051 - +0.9 496,051 - -0.4 496,083 + -1.0 496,083 + -2.5 496,083 + -0.4 496,083 + -1.5 496,083 + -1.2 496,083 + -0.0 496,083 + +0.5 496,083 + +0.1 496,083 + +1.7 496,083 + +0.4 496,084 - +0.2 496,084 - -0.9 496,084 - +0.3 496,084 - -0.4 496,084 - +0.5 496,084 - -0.1 496,084 - -0.2 496,084 - -0.2 496,084 - -0.4 496,084 - -0.2 496,084 - +2.1 496,084 - -0.2 496,084 - -1.0 496,405 + AO353_02335 0.61 -1.2 496,406 - AO353_02335 0.61 -1.0 496,451 + AO353_02335 0.70 -0.2 496,451 + AO353_02335 0.70 -2.9 496,451 + AO353_02335 0.70 -0.2 496,451 + AO353_02335 0.70 -0.4 496,451 + AO353_02335 0.70 +0.5 496,452 - AO353_02335 0.70 +0.7 496,452 - AO353_02335 0.70 +0.5 496,452 - AO353_02335 0.70 +0.1 496,452 - AO353_02335 0.70 +2.1 496,455 + AO353_02335 0.71 +0.1 496,455 + AO353_02335 0.71 -0.6 496,455 + AO353_02335 0.71 -0.7 496,455 + AO353_02335 0.71 -1.8 496,456 - AO353_02335 0.71 -1.4 496,541 + AO353_02335 0.88 +6.5 496,541 + AO353_02335 0.88 +0.5 496,542 - AO353_02335 0.88 -0.7 496,542 - AO353_02335 0.88 +1.8 496,542 - AO353_02335 0.88 +1.1 496,542 - AO353_02335 0.88 -1.1 496,542 - AO353_02335 0.88 +0.5 496,542 - AO353_02335 0.88 +0.4 496,599 + -0.3 496,599 + +0.9 496,599 + -0.3 496,599 + -0.5 496,600 - -0.6 496,600 - -0.1 496,600 - +0.4 496,645 + +0.1 496,646 - -0.5 496,740 + +0.1 496,740 + -0.1 496,740 + -0.2 496,740 + +1.4 496,741 - +1.1 496,741 - +0.1 496,741 - -1.0 496,741 - +0.4 496,741 - -0.4 496,830 + AO353_02340 0.14 +0.2 496,830 + AO353_02340 0.14 +1.5 496,831 - AO353_02340 0.14 -0.7 496,831 - AO353_02340 0.14 -0.6 496,831 - AO353_02340 0.14 -0.2 496,831 - AO353_02340 0.14 +0.9 496,831 - AO353_02340 0.14 +1.0 496,845 + AO353_02340 0.15 +1.1 496,846 - AO353_02340 0.15 -1.1 496,846 - AO353_02340 0.15 -0.0 496,902 + AO353_02340 0.19 +0.5 496,902 + AO353_02340 0.19 -0.9 496,902 + AO353_02340 0.19 -0.9 496,902 + AO353_02340 0.19 +0.4 496,903 - AO353_02340 0.19 -0.3 496,903 - AO353_02340 0.19 +0.4 496,903 - AO353_02340 0.19 -1.4 496,903 - AO353_02340 0.19 +1.3 496,903 - AO353_02340 0.19 +0.8 496,903 - AO353_02340 0.19 -0.2 496,947 + AO353_02340 0.22 +0.2 496,947 + AO353_02340 0.22 +1.1 496,948 - AO353_02340 0.23 -0.6 496,965 + AO353_02340 0.24 -0.4 496,965 + AO353_02340 0.24 +0.1 496,965 + AO353_02340 0.24 +0.2 496,965 + AO353_02340 0.24 -1.5 496,966 - AO353_02340 0.24 +0.1 497,050 - AO353_02340 0.30 -0.4 497,078 + AO353_02340 0.32 -0.8 497,079 - AO353_02340 0.33 +0.5 497,133 + AO353_02340 0.37 +0.1 497,133 + AO353_02340 0.37 -0.5 497,169 + AO353_02340 0.39 -0.2 497,170 - AO353_02340 0.40 +0.5 497,170 - AO353_02340 0.40 -1.1 497,211 - AO353_02340 0.43 -0.5 497,328 + AO353_02340 0.52 -0.3 497,328 + AO353_02340 0.52 -0.2 497,328 + AO353_02340 0.52 -0.2 497,328 + AO353_02340 0.52 +0.4 497,328 + AO353_02340 0.52 -0.3 497,329 - AO353_02340 0.52 +0.6 497,329 - AO353_02340 0.52 -1.5 497,329 - AO353_02340 0.52 +0.5 497,329 - AO353_02340 0.52 -0.2 497,329 - AO353_02340 0.52 -0.2 497,329 - AO353_02340 0.52 -0.9 497,329 - AO353_02340 0.52 -0.5 497,329 - AO353_02340 0.52 -0.5 497,329 - AO353_02340 0.52 +0.5 497,329 - AO353_02340 0.52 +0.1 497,329 - AO353_02340 0.52 +0.0 497,329 - AO353_02340 0.52 +0.3 497,329 - AO353_02340 0.52 -0.9 497,382 + AO353_02340 0.56 -1.2 497,382 + AO353_02340 0.56 +0.4 497,383 - AO353_02340 0.56 +0.4 497,383 - AO353_02340 0.56 +2.1 497,383 - AO353_02340 0.56 -1.2 497,395 - AO353_02340 0.57 -0.1 497,448 + AO353_02340 0.61 +0.4 497,448 + AO353_02340 0.61 +1.5 497,448 + AO353_02340 0.61 -0.5 497,448 + AO353_02340 0.61 +0.8 497,448 + AO353_02340 0.61 +1.3 497,449 - AO353_02340 0.61 -0.7 497,526 + AO353_02340 0.67 +0.6 497,526 + AO353_02340 0.67 -0.2 497,527 - AO353_02340 0.67 -0.5
Or see this region's nucleotide sequence