Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02190 and AO353_02195 are separated by 314 nucleotides AO353_02195 and AO353_02200 are separated by 264 nucleotides AO353_02200 and AO353_02205 are separated by 88 nucleotides
AO353_02190: AO353_02190 - hypothetical protein, at 469,557 to 471,650
_02190
AO353_02195: AO353_02195 - spermidine synthase, at 471,965 to 472,840
_02195
AO353_02200: AO353_02200 - hypothetical protein, at 473,105 to 473,296
_02200
AO353_02205: AO353_02205 - hypothetical protein, at 473,385 to 473,915
_02205
Position (kb) 471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 471.066 kb on + strand, within AO353_02190 at 471.202 kb on + strand, within AO353_02190 at 471.203 kb on - strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.400 kb on - strand, within AO353_02190 at 471.415 kb on + strand, within AO353_02190 at 471.415 kb on + strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.505 kb on + strand at 471.505 kb on + strand at 471.505 kb on + strand at 471.505 kb on + strand at 471.505 kb on + strand at 471.571 kb on + strand at 471.572 kb on - strand at 471.572 kb on - strand at 471.572 kb on - strand at 471.629 kb on + strand at 471.630 kb on - strand at 471.657 kb on + strand at 471.658 kb on - strand at 471.659 kb on + strand at 471.660 kb on - strand at 471.660 kb on - strand at 471.660 kb on - strand at 471.660 kb on - strand at 471.719 kb on + strand at 471.719 kb on + strand at 471.720 kb on - strand at 471.720 kb on - strand at 471.720 kb on - strand at 471.792 kb on + strand at 471.792 kb on + strand at 471.793 kb on - strand at 471.861 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.916 kb on + strand at 471.916 kb on + strand at 471.917 kb on - strand at 471.966 kb on + strand at 471.966 kb on + strand at 471.967 kb on - strand at 471.973 kb on + strand at 471.973 kb on + strand at 471.974 kb on - strand at 471.974 kb on - strand at 471.974 kb on - strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.003 kb on - strand at 472.027 kb on + strand at 472.028 kb on - strand at 472.044 kb on + strand at 472.044 kb on + strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.048 kb on - strand at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.180 kb on - strand, within AO353_02195 at 472.276 kb on + strand, within AO353_02195 at 472.311 kb on + strand, within AO353_02195 at 472.312 kb on - strand, within AO353_02195 at 472.647 kb on + strand, within AO353_02195 at 472.647 kb on + strand, within AO353_02195 at 472.648 kb on - strand, within AO353_02195 at 472.648 kb on - strand, within AO353_02195 at 472.648 kb on - strand, within AO353_02195 at 472.816 kb on - strand at 472.944 kb on + strand at 472.944 kb on + strand at 472.944 kb on + strand at 472.945 kb on - strand at 472.945 kb on - strand at 472.990 kb on + strand at 472.990 kb on + strand at 472.990 kb on + strand at 472.991 kb on - strand at 473.000 kb on + strand at 473.084 kb on + strand at 473.084 kb on + strand at 473.107 kb on - strand at 473.107 kb on - strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.146 kb on + strand, within AO353_02200 at 473.146 kb on + strand, within AO353_02200 at 473.146 kb on + strand, within AO353_02200 at 473.147 kb on - strand, within AO353_02200 at 473.221 kb on + strand, within AO353_02200 at 473.221 kb on + strand, within AO353_02200 at 473.221 kb on + strand, within AO353_02200 at 473.221 kb on + strand, within AO353_02200 at 473.222 kb on - strand, within AO353_02200 at 473.222 kb on - strand, within AO353_02200 at 473.222 kb on - strand, within AO353_02200 at 473.222 kb on - strand, within AO353_02200 at 473.245 kb on + strand, within AO353_02200 at 473.246 kb on - strand, within AO353_02200 at 473.360 kb on + strand at 473.361 kb on - strand at 473.363 kb on + strand at 473.387 kb on - strand at 473.482 kb on + strand, within AO353_02205 at 473.483 kb on - strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.733 kb on + strand, within AO353_02205 at 473.734 kb on - strand, within AO353_02205 at 473.773 kb on + strand, within AO353_02205 at 473.773 kb on + strand, within AO353_02205 at 473.774 kb on - strand, within AO353_02205 at 473.774 kb on - strand, within AO353_02205 at 473.818 kb on + strand, within AO353_02205 at 473.818 kb on + strand, within AO353_02205 at 473.818 kb on + strand, within AO353_02205 at 473.819 kb on - strand, within AO353_02205
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 471,066 + AO353_02190 0.72 +0.3 471,202 + AO353_02190 0.79 +1.1 471,203 - AO353_02190 0.79 -2.1 471,244 + AO353_02190 0.81 -1.1 471,244 + AO353_02190 0.81 -0.2 471,244 + AO353_02190 0.81 -1.2 471,244 + AO353_02190 0.81 +0.8 471,245 - AO353_02190 0.81 +0.9 471,245 - AO353_02190 0.81 -1.6 471,245 - AO353_02190 0.81 -1.0 471,245 - AO353_02190 0.81 -1.2 471,399 + AO353_02190 0.88 -0.1 471,399 + AO353_02190 0.88 -0.2 471,399 + AO353_02190 0.88 +1.5 471,399 + AO353_02190 0.88 +0.5 471,400 - AO353_02190 0.88 -0.2 471,415 + AO353_02190 0.89 +0.4 471,415 + AO353_02190 0.89 +0.5 471,416 - AO353_02190 0.89 +0.3 471,416 - AO353_02190 0.89 -2.5 471,416 - AO353_02190 0.89 -0.7 471,416 - AO353_02190 0.89 -1.9 471,416 - AO353_02190 0.89 +0.9 471,505 + -0.2 471,505 + +1.1 471,505 + -1.0 471,505 + +1.4 471,505 + +0.5 471,571 + +0.1 471,572 - +0.2 471,572 - +0.1 471,572 - -1.4 471,629 + +0.5 471,630 - +0.1 471,657 + +0.6 471,658 - -0.4 471,659 + +0.0 471,660 - -1.7 471,660 - -1.1 471,660 - +0.1 471,660 - -1.4 471,719 + -1.5 471,719 + -0.2 471,720 - +0.9 471,720 - +1.5 471,720 - -3.0 471,792 + -0.5 471,792 + -0.9 471,793 - -0.2 471,861 + -0.6 471,914 + -0.8 471,914 + +0.9 471,914 + -0.6 471,914 + +0.8 471,914 + -0.7 471,914 + +1.2 471,914 + -1.0 471,914 + -1.2 471,914 + +1.1 471,915 - +1.1 471,915 - -1.5 471,915 - +0.3 471,915 - -0.6 471,915 - -0.2 471,915 - -1.4 471,915 - +1.5 471,915 - +0.3 471,915 - -1.6 471,915 - -1.1 471,915 - -0.7 471,916 + +1.1 471,916 + -0.5 471,917 - -0.2 471,966 + +1.5 471,966 + +0.5 471,967 - +1.2 471,973 + +1.1 471,973 + -0.4 471,974 - +0.4 471,974 - +0.7 471,974 - -0.4 472,002 + -0.1 472,002 + -0.1 472,002 + -0.2 472,002 + -0.7 472,002 + -0.2 472,003 - -1.4 472,027 + -1.4 472,028 - -0.2 472,044 + +0.1 472,044 + +0.5 472,045 - -1.4 472,045 - +0.1 472,045 - -1.4 472,045 - -0.1 472,045 - -0.8 472,048 - -0.2 472,158 + AO353_02195 0.22 -0.7 472,158 + AO353_02195 0.22 -0.5 472,158 + AO353_02195 0.22 -1.7 472,158 + AO353_02195 0.22 -2.2 472,158 + AO353_02195 0.22 -1.1 472,158 + AO353_02195 0.22 +0.9 472,158 + AO353_02195 0.22 -1.1 472,180 - AO353_02195 0.25 -0.2 472,276 + AO353_02195 0.36 -0.2 472,311 + AO353_02195 0.39 +0.4 472,312 - AO353_02195 0.40 -1.2 472,647 + AO353_02195 0.78 -0.5 472,647 + AO353_02195 0.78 +0.8 472,648 - AO353_02195 0.78 -1.1 472,648 - AO353_02195 0.78 -1.2 472,648 - AO353_02195 0.78 -0.7 472,816 - -0.5 472,944 + +1.0 472,944 + +0.1 472,944 + -2.4 472,945 - -0.9 472,945 - -0.2 472,990 + +0.5 472,990 + +0.5 472,990 + -1.6 472,991 - -1.6 473,000 + -0.1 473,084 + -1.8 473,084 + +0.4 473,107 - -1.2 473,107 - +0.9 473,114 + +1.1 473,114 + -1.1 473,114 + +0.9 473,114 + -0.4 473,114 + +1.5 473,114 + +1.4 473,114 + -1.2 473,114 + +0.1 473,114 + +0.8 473,115 - -0.2 473,115 - +0.3 473,115 - -0.4 473,115 - -0.0 473,115 - +0.7 473,115 - +1.1 473,115 - -0.2 473,115 - -0.9 473,146 + AO353_02200 0.21 -0.0 473,146 + AO353_02200 0.21 +1.1 473,146 + AO353_02200 0.21 +0.7 473,147 - AO353_02200 0.22 +0.8 473,221 + AO353_02200 0.60 -0.6 473,221 + AO353_02200 0.60 +0.7 473,221 + AO353_02200 0.60 -0.2 473,221 + AO353_02200 0.60 -0.9 473,222 - AO353_02200 0.61 -0.2 473,222 - AO353_02200 0.61 -1.2 473,222 - AO353_02200 0.61 +0.3 473,222 - AO353_02200 0.61 -1.0 473,245 + AO353_02200 0.73 -0.9 473,246 - AO353_02200 0.73 +0.1 473,360 + -1.4 473,361 - -1.6 473,363 + -1.5 473,387 - -0.4 473,482 + AO353_02205 0.18 -0.2 473,483 - AO353_02205 0.18 +1.2 473,689 + AO353_02205 0.57 +0.5 473,689 + AO353_02205 0.57 +0.4 473,689 + AO353_02205 0.57 -0.9 473,689 + AO353_02205 0.57 -0.6 473,689 + AO353_02205 0.57 -0.1 473,689 + AO353_02205 0.57 -0.9 473,689 + AO353_02205 0.57 -0.7 473,689 + AO353_02205 0.57 +5.1 473,689 + AO353_02205 0.57 -0.9 473,689 + AO353_02205 0.57 -0.5 473,690 - AO353_02205 0.57 -0.3 473,690 - AO353_02205 0.57 +0.5 473,690 - AO353_02205 0.57 -0.4 473,690 - AO353_02205 0.57 -1.9 473,690 - AO353_02205 0.57 -0.5 473,690 - AO353_02205 0.57 -0.0 473,690 - AO353_02205 0.57 +1.4 473,690 - AO353_02205 0.57 +0.5 473,690 - AO353_02205 0.57 +0.1 473,690 - AO353_02205 0.57 +1.1 473,733 + AO353_02205 0.66 +1.5 473,734 - AO353_02205 0.66 +1.1 473,773 + AO353_02205 0.73 +1.3 473,773 + AO353_02205 0.73 +0.1 473,774 - AO353_02205 0.73 +0.1 473,774 - AO353_02205 0.73 -0.7 473,818 + AO353_02205 0.82 -0.2 473,818 + AO353_02205 0.82 +0.2 473,818 + AO353_02205 0.82 -1.1 473,819 - AO353_02205 0.82 +1.2
Or see this region's nucleotide sequence