Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02050 and AO353_02055 are separated by 121 nucleotides AO353_02055 and AO353_02060 overlap by 4 nucleotides AO353_02060 and AO353_02065 are separated by 28 nucleotides
AO353_02050: AO353_02050 - 30S ribosomal protein S1, at 435,252 to 436,943
_02050
AO353_02055: AO353_02055 - cytidylate kinase, at 437,065 to 437,754
_02055
AO353_02060: AO353_02060 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 437,751 to 439,958
_02060
AO353_02065: AO353_02065 - aspartate aminotransferase, at 439,987 to 441,099
_02065
Position (kb) 437
438
439
440 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 437.037 kb on - strand at 437.037 kb on - strand at 439.085 kb on - strand, within AO353_02060 at 439.085 kb on - strand, within AO353_02060 at 439.085 kb on - strand, within AO353_02060 at 439.085 kb on - strand, within AO353_02060 at 439.085 kb on - strand, within AO353_02060 at 439.085 kb on - strand, within AO353_02060 at 439.215 kb on - strand, within AO353_02060 at 439.215 kb on - strand, within AO353_02060 at 439.353 kb on - strand, within AO353_02060 at 439.958 kb on + strand at 439.958 kb on + strand at 439.958 kb on + strand at 439.958 kb on + strand at 439.958 kb on + strand at 439.958 kb on + strand at 439.958 kb on + strand at 439.959 kb on - strand at 439.959 kb on - strand at 439.959 kb on - strand at 439.959 kb on - strand at 439.959 kb on - strand at 440.081 kb on + strand at 440.081 kb on + strand at 440.081 kb on + strand at 440.082 kb on - strand at 440.082 kb on - strand at 440.082 kb on - strand at 440.267 kb on + strand, within AO353_02065 at 440.267 kb on + strand, within AO353_02065 at 440.267 kb on + strand, within AO353_02065 at 440.268 kb on - strand, within AO353_02065 at 440.268 kb on - strand, within AO353_02065 at 440.379 kb on - strand, within AO353_02065 at 440.405 kb on + strand, within AO353_02065 at 440.405 kb on + strand, within AO353_02065 at 440.406 kb on - strand, within AO353_02065 at 440.492 kb on + strand, within AO353_02065 at 440.493 kb on - strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.501 kb on + strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.502 kb on - strand, within AO353_02065 at 440.774 kb on + strand, within AO353_02065 at 440.774 kb on + strand, within AO353_02065 at 440.774 kb on + strand, within AO353_02065 at 440.775 kb on - strand, within AO353_02065 at 440.775 kb on - strand, within AO353_02065 at 440.775 kb on - strand, within AO353_02065 at 440.775 kb on - strand, within AO353_02065
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 437,037 - -1.6 437,037 - +0.8 439,085 - AO353_02060 0.60 -0.2 439,085 - AO353_02060 0.60 -0.6 439,085 - AO353_02060 0.60 -0.5 439,085 - AO353_02060 0.60 -0.5 439,085 - AO353_02060 0.60 +1.1 439,085 - AO353_02060 0.60 -0.7 439,215 - AO353_02060 0.66 -1.7 439,215 - AO353_02060 0.66 -0.2 439,353 - AO353_02060 0.73 -1.2 439,958 + -0.6 439,958 + -0.1 439,958 + -0.1 439,958 + +0.1 439,958 + +0.1 439,958 + -1.2 439,958 + +0.4 439,959 - -0.9 439,959 - -0.4 439,959 - +0.5 439,959 - -1.2 439,959 - -0.4 440,081 + +1.1 440,081 + +1.1 440,081 + +1.1 440,082 - -2.5 440,082 - -0.6 440,082 - -1.2 440,267 + AO353_02065 0.25 -1.1 440,267 + AO353_02065 0.25 +0.2 440,267 + AO353_02065 0.25 +3.1 440,268 - AO353_02065 0.25 +1.8 440,268 - AO353_02065 0.25 -1.1 440,379 - AO353_02065 0.35 +0.2 440,405 + AO353_02065 0.38 -0.7 440,405 + AO353_02065 0.38 -0.1 440,406 - AO353_02065 0.38 +1.1 440,492 + AO353_02065 0.45 +1.1 440,493 - AO353_02065 0.45 +0.4 440,501 + AO353_02065 0.46 +0.8 440,501 + AO353_02065 0.46 -1.0 440,501 + AO353_02065 0.46 -0.8 440,501 + AO353_02065 0.46 +0.1 440,501 + AO353_02065 0.46 -0.7 440,501 + AO353_02065 0.46 -1.2 440,501 + AO353_02065 0.46 -0.5 440,502 - AO353_02065 0.46 -0.5 440,502 - AO353_02065 0.46 +1.2 440,502 - AO353_02065 0.46 -0.2 440,502 - AO353_02065 0.46 -0.5 440,502 - AO353_02065 0.46 -1.1 440,502 - AO353_02065 0.46 +0.5 440,502 - AO353_02065 0.46 -0.3 440,502 - AO353_02065 0.46 -1.1 440,502 - AO353_02065 0.46 +0.8 440,502 - AO353_02065 0.46 +1.7 440,502 - AO353_02065 0.46 -0.9 440,502 - AO353_02065 0.46 -0.2 440,774 + AO353_02065 0.71 -0.2 440,774 + AO353_02065 0.71 -1.5 440,774 + AO353_02065 0.71 -0.9 440,775 - AO353_02065 0.71 +2.1 440,775 - AO353_02065 0.71 -0.6 440,775 - AO353_02065 0.71 +0.1 440,775 - AO353_02065 0.71 +0.4
Or see this region's nucleotide sequence