Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01600 and AO353_01605 are separated by 2 nucleotides AO353_01605 and AO353_01610 are separated by 27 nucleotides AO353_01610 and AO353_01615 are separated by 158 nucleotides AO353_01615 and AO353_01620 are separated by 432 nucleotides
AO353_01600: AO353_01600 - AAA family ATPase, at 340,537 to 341,868
_01600
AO353_01605: AO353_01605 - hypothetical protein, at 341,871 to 342,401
_01605
AO353_01610: AO353_01610 - pilus assembly protein PilA, at 342,429 to 342,626
_01610
AO353_01615: AO353_01615 - pilus assembly protein PilA, at 342,785 to 342,982
_01615
AO353_01620: AO353_01620 - AraC family transcriptional regulator, at 343,415 to 344,281
_01620
Position (kb) 342
343 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 341.905 kb on + strand at 341.916 kb on + strand at 341.916 kb on + strand at 341.916 kb on + strand at 341.922 kb on - strand at 341.989 kb on + strand, within AO353_01605 at 342.033 kb on + strand, within AO353_01605 at 342.057 kb on + strand, within AO353_01605 at 342.058 kb on - strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.262 kb on + strand, within AO353_01605 at 342.262 kb on + strand, within AO353_01605 at 342.263 kb on - strand, within AO353_01605 at 342.263 kb on - strand, within AO353_01605 at 342.263 kb on - strand, within AO353_01605 at 342.263 kb on - strand, within AO353_01605 at 342.317 kb on + strand, within AO353_01605 at 342.317 kb on + strand, within AO353_01605 at 342.317 kb on + strand, within AO353_01605 at 342.363 kb on + strand at 342.364 kb on - strand at 342.369 kb on + strand at 342.369 kb on + strand at 342.369 kb on + strand at 342.369 kb on + strand at 342.370 kb on - strand at 342.370 kb on - strand at 342.381 kb on + strand at 342.382 kb on - strand at 342.424 kb on + strand at 342.424 kb on + strand at 342.424 kb on + strand at 342.424 kb on + strand at 342.424 kb on + strand at 342.425 kb on - strand at 342.425 kb on - strand at 342.425 kb on - strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.675 kb on - strand at 342.696 kb on - strand at 342.799 kb on + strand at 342.886 kb on + strand, within AO353_01615 at 342.886 kb on + strand, within AO353_01615 at 342.886 kb on + strand, within AO353_01615 at 342.909 kb on + strand, within AO353_01615 at 342.909 kb on + strand, within AO353_01615 at 342.910 kb on - strand, within AO353_01615 at 342.910 kb on - strand, within AO353_01615 at 342.910 kb on - strand, within AO353_01615 at 342.910 kb on - strand, within AO353_01615 at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.968 kb on - strand at 342.968 kb on - strand at 342.968 kb on - strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.042 kb on - strand at 343.042 kb on - strand at 343.042 kb on - strand at 343.042 kb on - strand at 343.042 kb on - strand at 343.045 kb on + strand at 343.045 kb on + strand at 343.045 kb on + strand at 343.046 kb on - strand at 343.046 kb on - strand at 343.046 kb on - strand at 343.046 kb on - strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.051 kb on - strand at 343.074 kb on + strand at 343.075 kb on - strand at 343.173 kb on - strand at 343.173 kb on - strand at 343.173 kb on - strand at 343.257 kb on + strand at 343.258 kb on - strand at 343.258 kb on - strand at 343.258 kb on - strand at 343.261 kb on + strand at 343.262 kb on - strand at 343.294 kb on - strand at 343.294 kb on - strand at 343.302 kb on + strand at 343.303 kb on - strand at 343.303 kb on - strand at 343.303 kb on - strand at 343.303 kb on - strand at 343.334 kb on + strand at 343.335 kb on - strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.366 kb on + strand at 343.366 kb on + strand at 343.366 kb on + strand at 343.366 kb on + strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.446 kb on + strand at 343.446 kb on + strand at 343.446 kb on + strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.718 kb on + strand, within AO353_01620 at 343.718 kb on + strand, within AO353_01620 at 343.718 kb on + strand, within AO353_01620 at 343.718 kb on + strand, within AO353_01620 at 343.718 kb on + strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.789 kb on - strand, within AO353_01620 at 343.789 kb on - strand, within AO353_01620 at 343.910 kb on + strand, within AO353_01620 at 343.910 kb on + strand, within AO353_01620 at 343.910 kb on + strand, within AO353_01620 at 343.911 kb on - strand, within AO353_01620 at 343.911 kb on - strand, within AO353_01620
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 341,905 + -0.4 341,916 + -0.3 341,916 + +1.1 341,916 + +0.9 341,922 - +0.1 341,989 + AO353_01605 0.22 -0.9 342,033 + AO353_01605 0.31 -0.5 342,057 + AO353_01605 0.35 +2.1 342,058 - AO353_01605 0.35 +1.1 342,187 + AO353_01605 0.60 -1.0 342,187 + AO353_01605 0.60 -0.9 342,187 + AO353_01605 0.60 -0.3 342,187 + AO353_01605 0.60 +0.7 342,187 + AO353_01605 0.60 -2.6 342,187 + AO353_01605 0.60 -1.3 342,187 + AO353_01605 0.60 -1.1 342,187 + AO353_01605 0.60 +0.5 342,187 + AO353_01605 0.60 +0.1 342,187 + AO353_01605 0.60 +0.4 342,188 - AO353_01605 0.60 +0.4 342,188 - AO353_01605 0.60 +1.6 342,188 - AO353_01605 0.60 -0.1 342,188 - AO353_01605 0.60 -1.6 342,188 - AO353_01605 0.60 -1.3 342,188 - AO353_01605 0.60 -0.9 342,188 - AO353_01605 0.60 -1.4 342,188 - AO353_01605 0.60 -2.3 342,262 + AO353_01605 0.74 -0.9 342,262 + AO353_01605 0.74 -0.3 342,263 - AO353_01605 0.74 +0.3 342,263 - AO353_01605 0.74 -0.6 342,263 - AO353_01605 0.74 -1.6 342,263 - AO353_01605 0.74 +0.5 342,317 + AO353_01605 0.84 +0.8 342,317 + AO353_01605 0.84 -0.9 342,317 + AO353_01605 0.84 -1.6 342,363 + -2.4 342,364 - -0.3 342,369 + -0.1 342,369 + -1.7 342,369 + -0.5 342,369 + +0.5 342,370 - -0.7 342,370 - +0.1 342,381 + -1.6 342,382 - -0.3 342,424 + +1.6 342,424 + -2.3 342,424 + +1.6 342,424 + -0.7 342,424 + +0.3 342,425 - -0.3 342,425 - +0.4 342,425 - +0.1 342,666 + +0.4 342,666 + -0.5 342,666 + +1.1 342,666 + +2.1 342,666 + +1.6 342,666 + +0.5 342,666 + -0.5 342,666 + +0.5 342,666 + -0.7 342,666 + +0.3 342,666 + -1.2 342,666 + -0.5 342,666 + -0.0 342,666 + +0.5 342,666 + -0.5 342,667 - -1.7 342,667 - -0.6 342,667 - -0.9 342,667 - +1.6 342,667 - -0.9 342,667 - +0.3 342,667 - -2.1 342,667 - -1.4 342,675 - +0.5 342,696 - -0.3 342,799 + +6.4 342,886 + AO353_01615 0.51 -0.5 342,886 + AO353_01615 0.51 +0.1 342,886 + AO353_01615 0.51 -0.4 342,909 + AO353_01615 0.63 -1.0 342,909 + AO353_01615 0.63 -0.1 342,910 - AO353_01615 0.63 -0.8 342,910 - AO353_01615 0.63 -1.6 342,910 - AO353_01615 0.63 -1.7 342,910 - AO353_01615 0.63 +1.1 342,967 + +1.1 342,967 + -1.3 342,967 + +0.1 342,967 + +0.1 342,967 + +0.5 342,967 + -1.1 342,967 + +1.6 342,967 + +0.1 342,968 - -1.3 342,968 - +0.2 342,968 - -1.1 343,041 + -0.7 343,041 + +0.1 343,041 + -0.6 343,041 + +0.7 343,041 + -0.9 343,041 + +0.1 343,041 + -0.3 343,042 - +0.5 343,042 - -0.4 343,042 - -1.4 343,042 - -0.3 343,042 - +1.1 343,045 + +0.1 343,045 + -1.5 343,045 + -0.0 343,046 - -1.7 343,046 - +1.1 343,046 - +0.1 343,046 - -0.4 343,050 + +0.8 343,050 + -1.8 343,050 + -0.7 343,050 + +1.2 343,050 + -1.8 343,050 + +1.1 343,051 - -1.1 343,074 + +1.1 343,075 - -0.4 343,173 - +0.5 343,173 - -0.2 343,173 - -1.2 343,257 + -0.3 343,258 - -2.2 343,258 - +0.1 343,258 - -0.4 343,261 + -0.7 343,262 - +0.3 343,294 - +0.2 343,294 - +2.1 343,302 + -1.4 343,303 - -0.4 343,303 - -0.3 343,303 - +0.3 343,303 - -1.1 343,334 + +0.8 343,335 - +1.1 343,363 + -0.1 343,363 + +0.3 343,363 + -1.3 343,363 + +0.9 343,363 + -0.3 343,363 + -0.6 343,363 + +1.1 343,363 + +1.1 343,363 + -0.8 343,363 + -1.1 343,363 + +1.7 343,364 - +1.1 343,364 - +0.8 343,364 - +1.5 343,364 - +1.1 343,364 - -0.5 343,364 - -0.3 343,366 + +1.1 343,366 + -0.6 343,366 + -2.7 343,366 + +0.1 343,367 - -0.3 343,367 - +0.5 343,367 - +1.3 343,367 - -0.5 343,367 - +0.2 343,367 - -2.2 343,408 + +0.5 343,408 + -0.9 343,408 + -0.0 343,408 + -0.4 343,408 + +0.6 343,408 + -0.7 343,408 + +1.1 343,408 + -1.3 343,409 - -0.1 343,409 - -0.1 343,409 - +0.4 343,409 - -0.9 343,409 - -0.3 343,409 - -0.3 343,446 + -1.0 343,446 + -0.9 343,446 + -0.5 343,447 - +0.2 343,447 - -1.4 343,447 - +0.9 343,447 - -0.9 343,447 - +1.5 343,718 + AO353_01620 0.35 +0.7 343,718 + AO353_01620 0.35 +1.8 343,718 + AO353_01620 0.35 +0.3 343,718 + AO353_01620 0.35 -0.5 343,718 + AO353_01620 0.35 +0.1 343,719 - AO353_01620 0.35 -0.7 343,719 - AO353_01620 0.35 -1.8 343,719 - AO353_01620 0.35 -2.2 343,719 - AO353_01620 0.35 -1.1 343,719 - AO353_01620 0.35 +0.5 343,719 - AO353_01620 0.35 +0.6 343,719 - AO353_01620 0.35 +1.1 343,719 - AO353_01620 0.35 -0.8 343,719 - AO353_01620 0.35 +0.1 343,789 - AO353_01620 0.43 +1.6 343,789 - AO353_01620 0.43 +1.3 343,910 + AO353_01620 0.57 -0.6 343,910 + AO353_01620 0.57 +0.5 343,910 + AO353_01620 0.57 -0.7 343,911 - AO353_01620 0.57 +0.2 343,911 - AO353_01620 0.57 -0.3
Or see this region's nucleotide sequence