Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00930

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00925 and AO353_00930 are separated by 170 nucleotidesAO353_00930 and AO353_00935 are separated by 174 nucleotides AO353_00925: AO353_00925 - aminodeoxychorismate synthase component I, at 210,558 to 211,901 _00925 AO353_00930: AO353_00930 - phosphoserine phosphatase, at 212,072 to 212,689 _00930 AO353_00935: AO353_00935 - phosphoadenosine phosphosulfate reductase, at 212,864 to 213,598 _00935 Position (kb) 212 213Strain fitness (log2 ratio) -2 -1 0 1 2 3at 211.110 kb on + strand, within AO353_00925at 211.111 kb on - strand, within AO353_00925at 211.140 kb on + strand, within AO353_00925at 211.140 kb on + strand, within AO353_00925at 211.140 kb on + strand, within AO353_00925at 211.141 kb on - strand, within AO353_00925at 211.141 kb on - strand, within AO353_00925at 211.141 kb on - strand, within AO353_00925at 211.141 kb on - strand, within AO353_00925at 211.141 kb on - strand, within AO353_00925at 211.141 kb on - strand, within AO353_00925at 211.141 kb on - strand, within AO353_00925at 211.141 kb on - strand, within AO353_00925at 211.141 kb on - strand, within AO353_00925at 211.141 kb on - strand, within AO353_00925at 211.141 kb on - strand, within AO353_00925at 211.161 kb on + strand, within AO353_00925at 211.162 kb on - strand, within AO353_00925at 211.162 kb on - strand, within AO353_00925at 211.339 kb on + strand, within AO353_00925at 211.339 kb on + strand, within AO353_00925at 211.339 kb on + strand, within AO353_00925at 211.340 kb on - strand, within AO353_00925at 211.340 kb on - strand, within AO353_00925at 211.340 kb on - strand, within AO353_00925at 211.340 kb on - strand, within AO353_00925at 211.704 kb on + strand, within AO353_00925at 211.722 kb on + strand, within AO353_00925at 211.722 kb on + strand, within AO353_00925at 211.722 kb on + strand, within AO353_00925at 211.723 kb on - strand, within AO353_00925at 211.723 kb on - strand, within AO353_00925at 211.723 kb on - strand, within AO353_00925at 211.723 kb on - strand, within AO353_00925at 211.723 kb on - strand, within AO353_00925at 211.732 kb on + strand, within AO353_00925at 211.732 kb on + strand, within AO353_00925at 211.766 kb on + strand, within AO353_00925at 211.766 kb on + strand, within AO353_00925at 211.766 kb on + strand, within AO353_00925at 211.767 kb on - strandat 211.767 kb on - strandat 211.846 kb on - strandat 211.993 kb on + strandat 211.994 kb on - strandat 211.994 kb on - strandat 212.002 kb on - strandat 212.002 kb on - strandat 212.073 kb on + strandat 212.073 kb on + strandat 212.073 kb on + strandat 212.229 kb on + strand, within AO353_00930at 212.229 kb on + strand, within AO353_00930at 212.229 kb on + strand, within AO353_00930at 212.229 kb on + strand, within AO353_00930at 212.230 kb on - strand, within AO353_00930at 212.230 kb on - strand, within AO353_00930at 212.259 kb on + strand, within AO353_00930at 212.259 kb on + strand, within AO353_00930at 212.259 kb on + strand, within AO353_00930at 212.259 kb on + strand, within AO353_00930at 212.260 kb on - strand, within AO353_00930at 212.260 kb on - strand, within AO353_00930at 212.260 kb on - strand, within AO353_00930at 212.260 kb on - strand, within AO353_00930at 212.410 kb on - strand, within AO353_00930at 212.585 kb on - strand, within AO353_00930at 212.706 kb on + strandat 212.706 kb on + strandat 212.707 kb on - strandat 212.707 kb on - strandat 212.707 kb on - strandat 212.748 kb on + strandat 212.758 kb on + strandat 212.758 kb on + strandat 212.758 kb on + strandat 212.758 kb on + strandat 212.758 kb on + strandat 212.758 kb on + strandat 212.759 kb on - strandat 212.808 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 213.650 kb on - strandat 213.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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211,110 + AO353_00925 0.41 +0.1
211,111 - AO353_00925 0.41 +0.4
211,140 + AO353_00925 0.43 -0.3
211,140 + AO353_00925 0.43 -1.7
211,140 + AO353_00925 0.43 +0.0
211,141 - AO353_00925 0.43 +0.6
211,141 - AO353_00925 0.43 -0.6
211,141 - AO353_00925 0.43 -0.3
211,141 - AO353_00925 0.43 -0.7
211,141 - AO353_00925 0.43 -1.2
211,141 - AO353_00925 0.43 -2.2
211,141 - AO353_00925 0.43 +1.0
211,141 - AO353_00925 0.43 +0.4
211,141 - AO353_00925 0.43 -0.3
211,141 - AO353_00925 0.43 +0.0
211,141 - AO353_00925 0.43 -0.7
211,161 + AO353_00925 0.45 +0.5
211,162 - AO353_00925 0.45 +0.4
211,162 - AO353_00925 0.45 -0.1
211,339 + AO353_00925 0.58 +2.0
211,339 + AO353_00925 0.58 +0.3
211,339 + AO353_00925 0.58 +2.0
211,340 - AO353_00925 0.58 -0.5
211,340 - AO353_00925 0.58 -0.2
211,340 - AO353_00925 0.58 -1.4
211,340 - AO353_00925 0.58 -0.2
211,704 + AO353_00925 0.85 +1.4
211,722 + AO353_00925 0.87 +0.4
211,722 + AO353_00925 0.87 +0.6
211,722 + AO353_00925 0.87 -1.6
211,723 - AO353_00925 0.87 -0.2
211,723 - AO353_00925 0.87 +0.1
211,723 - AO353_00925 0.87 +0.8
211,723 - AO353_00925 0.87 -0.7
211,723 - AO353_00925 0.87 -0.7
211,732 + AO353_00925 0.87 +1.0
211,732 + AO353_00925 0.87 +0.0
211,766 + AO353_00925 0.90 -0.8
211,766 + AO353_00925 0.90 +0.1
211,766 + AO353_00925 0.90 +0.4
211,767 - -1.0
211,767 - -1.2
211,846 - +0.4
211,993 + +0.4
211,994 - -1.7
211,994 - -0.5
212,002 - -0.2
212,002 - -0.2
212,073 + +0.7
212,073 + -0.6
212,073 + +0.7
212,229 + AO353_00930 0.25 +1.3
212,229 + AO353_00930 0.25 +1.3
212,229 + AO353_00930 0.25 +0.6
212,229 + AO353_00930 0.25 +0.4
212,230 - AO353_00930 0.26 +0.7
212,230 - AO353_00930 0.26 -0.6
212,259 + AO353_00930 0.30 +2.0
212,259 + AO353_00930 0.30 +0.5
212,259 + AO353_00930 0.30 +0.5
212,259 + AO353_00930 0.30 +0.8
212,260 - AO353_00930 0.30 +0.0
212,260 - AO353_00930 0.30 +0.7
212,260 - AO353_00930 0.30 +1.3
212,260 - AO353_00930 0.30 +0.5
212,410 - AO353_00930 0.55 +0.0
212,585 - AO353_00930 0.83 +0.3
212,706 + +1.3
212,706 + +0.8
212,707 - -2.0
212,707 - +0.3
212,707 - +0.4
212,748 + +3.6
212,758 + +0.3
212,758 + +0.8
212,758 + -0.1
212,758 + +0.2
212,758 + +0.6
212,758 + +2.1
212,759 - -2.4
212,808 + +0.0
212,822 + -0.2
212,822 + +1.2
212,822 + +2.5
212,822 + -1.8
212,822 + +0.8
212,822 + +1.3
212,822 + +1.4
212,822 + -1.3
212,822 + -0.8
212,822 + -0.6
212,822 + -1.3
212,822 + +1.0
212,822 + +1.1
212,824 + +0.0
212,824 + +0.1
212,824 + +1.0
212,824 + +0.3
212,824 + +0.2
212,824 + +2.6
212,824 + -1.5
212,824 + +0.1
212,824 + +0.0
212,824 + +0.3
212,824 + +2.0
212,824 + -0.4
212,824 + +0.0
213,650 - -0.4
213,650 - -2.4

Or see this region's nucleotide sequence