Strain Fitness in Shewanella loihica PV-4 around Shew_3446

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3445 and Shew_3446 are separated by 58 nucleotidesShew_3446 and Shew_3447 are separated by 27 nucleotidesShew_3447 and lpxC are separated by 3 nucleotides Shew_3445: Shew_3445 - preprotein translocase subunit SecA (RefSeq), at 4,125,120 to 4,127,843 _3445 Shew_3446: Shew_3446 - peptidase M23B (RefSeq), at 4,127,902 to 4,128,801 _3446 Shew_3447: Shew_3447 - hypothetical protein (RefSeq), at 4,128,829 to 4,129,284 _3447 Shew_3448: lpxC - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (RefSeq), at 4,129,288 to 4,130,208 lpxC Position (kb) 4127 4128 4129Strain fitness (log2 ratio) -2 -1 0 1at 4128.055 kb on - strand, within Shew_3446at 4128.125 kb on - strand, within Shew_3446at 4128.207 kb on - strand, within Shew_3446at 4128.391 kb on - strand, within Shew_3446at 4128.533 kb on + strand, within Shew_3446at 4128.650 kb on + strand, within Shew_3446at 4129.265 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,128,055 - Shew_3446 0.17 -1.8
4,128,125 - Shew_3446 0.25 -2.5
4,128,207 - Shew_3446 0.34 +0.2
4,128,391 - Shew_3446 0.54 +0.3
4,128,533 + Shew_3446 0.70 -0.5
4,128,650 + Shew_3446 0.83 -1.4
4,129,265 + +0.6

Or see this region's nucleotide sequence