Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3253 and Shew_3254 are separated by 162 nucleotides Shew_3254 and Shew_3255 are separated by 51 nucleotides Shew_3255 and Shew_3256 are separated by 32 nucleotides Shew_3256 and Shew_3257 overlap by 4 nucleotides
Shew_3253: Shew_3253 - hypothetical protein (RefSeq), at 3,891,249 to 3,891,512
_3253
Shew_3254: Shew_3254 - cytochrome c family protein (RefSeq), at 3,891,675 to 3,892,235
_3254
Shew_3255: Shew_3255 - hypothetical protein (RefSeq), at 3,892,287 to 3,892,760
_3255
Shew_3256: Shew_3256 - copper resistance B precursor (RefSeq), at 3,892,793 to 3,893,749
_3256
Shew_3257: Shew_3257 - CopA family copper resistance protein (RefSeq), at 3,893,746 to 3,895,491
_3257
Position (kb) 3892
3893 Strain fitness (log2 ratio) -1
0
1 at 3891.565 kb on + strand at 3892.314 kb on - strand at 3892.694 kb on + strand, within Shew_3255 at 3892.909 kb on - strand, within Shew_3256 at 3892.961 kb on + strand, within Shew_3256 at 3893.027 kb on - strand, within Shew_3256 at 3893.069 kb on - strand, within Shew_3256 at 3893.182 kb on - strand, within Shew_3256
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,891,565 + -0.5 3,892,314 - -0.3 3,892,694 + Shew_3255 0.86 -0.5 3,892,909 - Shew_3256 0.12 +0.2 3,892,961 + Shew_3256 0.18 +0.1 3,893,027 - Shew_3256 0.24 +0.9 3,893,069 - Shew_3256 0.29 +0.0 3,893,182 - Shew_3256 0.41 +0.2
Or see this region's nucleotide sequence