Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3164 and Shew_3165 overlap by 8 nucleotides Shew_3165 and Shew_3166 are separated by 6 nucleotides Shew_3166 and Shew_3167 are separated by 528 nucleotides
Shew_3164: Shew_3164 - ABC transporter-related protein (RefSeq), at 3,767,947 to 3,768,672
_3164
Shew_3165: Shew_3165 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,768,665 to 3,769,345
_3165
Shew_3166: Shew_3166 - extracellular solute-binding protein (RefSeq), at 3,769,352 to 3,770,080
_3166
Shew_3167: Shew_3167 - hypothetical protein (RefSeq), at 3,770,609 to 3,770,854
_3167
Position (kb)
3769
3770
3771 Strain fitness (log2 ratio)
-1
0
1 at 3768.595 kb on - strand, within Shew_3164 at 3768.806 kb on + strand, within Shew_3165 at 3769.125 kb on - strand, within Shew_3165 at 3769.143 kb on + strand, within Shew_3165 at 3769.472 kb on - strand, within Shew_3166 at 3769.479 kb on + strand, within Shew_3166 at 3769.497 kb on + strand, within Shew_3166 at 3770.122 kb on + strand at 3770.130 kb on - strand at 3770.245 kb on - strand at 3770.245 kb on - strand at 3770.245 kb on - strand at 3770.642 kb on - strand, within Shew_3167 at 3770.829 kb on - strand, within Shew_3167 at 3770.864 kb on - strand at 3770.950 kb on + strand at 3770.958 kb on - strand at 3771.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,768,595 - Shew_3164 0.89 -0.4 3,768,806 + Shew_3165 0.21 -0.7 3,769,125 - Shew_3165 0.68 -1.3 3,769,143 + Shew_3165 0.70 -0.7 3,769,472 - Shew_3166 0.16 +0.1 3,769,479 + Shew_3166 0.17 -1.3 3,769,497 + Shew_3166 0.20 -0.9 3,770,122 + +0.0 3,770,130 - -0.2 3,770,245 - +0.3 3,770,245 - -0.5 3,770,245 - +0.5 3,770,642 - Shew_3167 0.13 +0.6 3,770,829 - Shew_3167 0.89 +0.2 3,770,864 - -0.1 3,770,950 + +0.3 3,770,958 - -0.1 3,771,025 - +0.5
Or see this region's nucleotide sequence