Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3049 and Shew_3050 are separated by 53 nucleotides Shew_3050 and Shew_3051 are separated by 98 nucleotides Shew_3051 and Shew_3052 are separated by 214 nucleotides
Shew_3049: Shew_3049 - major facilitator transporter (RefSeq), at 3,621,793 to 3,623,010
_3049
Shew_3050: Shew_3050 - hypothetical protein (RefSeq), at 3,623,064 to 3,623,420
_3050
Shew_3051: Shew_3051 - cupin 2 domain-containing protein (RefSeq), at 3,623,519 to 3,624,007
_3051
Shew_3052: Shew_3052 - AraC family transcriptional regulator (RefSeq), at 3,624,222 to 3,625,118
_3052
Position (kb)
3623
3624
3625 Strain fitness (log2 ratio)
-1
0
1 at 3622.766 kb on + strand, within Shew_3049 at 3623.389 kb on + strand at 3623.654 kb on + strand, within Shew_3051 at 3623.737 kb on + strand, within Shew_3051 at 3623.813 kb on + strand, within Shew_3051 at 3623.869 kb on + strand, within Shew_3051 at 3624.040 kb on + strand at 3624.355 kb on + strand, within Shew_3052 at 3624.793 kb on + strand, within Shew_3052 at 3624.893 kb on + strand, within Shew_3052
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,622,766 + Shew_3049 0.80 +0.1 3,623,389 + +0.0 3,623,654 + Shew_3051 0.28 +0.4 3,623,737 + Shew_3051 0.45 +0.6 3,623,813 + Shew_3051 0.60 +0.8 3,623,869 + Shew_3051 0.72 +0.5 3,624,040 + +0.3 3,624,355 + Shew_3052 0.15 -0.1 3,624,793 + Shew_3052 0.64 +0.3 3,624,893 + Shew_3052 0.75 +0.6
Or see this region's nucleotide sequence