Strain Fitness in Shewanella loihica PV-4 around Shew_2415

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2414 and Shew_2415 are separated by 20 nucleotidesShew_2415 and Shew_2416 are separated by 186 nucleotides Shew_2414: Shew_2414 - ATP-NAD/AcoX kinase (RefSeq), at 2,833,865 to 2,835,031 _2414 Shew_2415: Shew_2415 - major facilitator transporter (RefSeq), at 2,835,052 to 2,836,260 _2415 Shew_2416: Shew_2416 - chorismate synthase (RefSeq), at 2,836,447 to 2,837,541 _2416 Position (kb) 2835 2836 2837Strain fitness (log2 ratio) -1 0 1at 2834.640 kb on - strand, within Shew_2414at 2834.907 kb on + strand, within Shew_2414at 2835.327 kb on + strand, within Shew_2415at 2836.173 kb on + strandat 2837.093 kb on - strand, within Shew_2416

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,834,640 - Shew_2414 0.66 +0.2
2,834,907 + Shew_2414 0.89 -0.6
2,835,327 + Shew_2415 0.23 -0.6
2,836,173 + +0.8
2,837,093 - Shew_2416 0.59 +0.1

Or see this region's nucleotide sequence