Strain Fitness in Shewanella loihica PV-4 around Shew_2410

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2409 and Shew_2410 are separated by 186 nucleotidesShew_2410 and Shew_2411 are separated by 103 nucleotides Shew_2409: Shew_2409 - short chain dehydrogenase (RefSeq), at 2,828,652 to 2,829,389 _2409 Shew_2410: Shew_2410 - beta-ketoacyl synthase (RefSeq), at 2,829,576 to 2,830,787 _2410 Shew_2411: Shew_2411 - FAD dependent oxidoreductase (RefSeq), at 2,830,891 to 2,832,951 _2411 Position (kb) 2829 2830 2831Strain fitness (log2 ratio) -1 0 1 2at 2828.702 kb on + strandat 2828.744 kb on + strand, within Shew_2409at 2829.277 kb on - strand, within Shew_2409at 2829.419 kb on + strandat 2830.534 kb on - strand, within Shew_2410at 2831.475 kb on + strand, within Shew_2411

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,828,702 + +1.8
2,828,744 + Shew_2409 0.12 +0.7
2,829,277 - Shew_2409 0.85 +0.5
2,829,419 + +0.9
2,830,534 - Shew_2410 0.79 -0.8
2,831,475 + Shew_2411 0.28 +1.4

Or see this region's nucleotide sequence