Strain Fitness in Shewanella loihica PV-4 around Shew_2387
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,796,301 | + | Shew_2386 | 0.86 | +0.3 | |
2,797,157 | + | Shew_2387 | 0.32 | -0.4 | |
2,797,185 | - | Shew_2387 | 0.35 | -1.5 | |
2,797,258 | - | Shew_2387 | 0.43 | -0.5 | |
2,797,352 | - | Shew_2387 | 0.53 | +0.2 | |
2,797,384 | + | Shew_2387 | 0.57 | -0.8 | |
2,797,925 | + | +1.7 | |||
2,798,361 | - | Shew_2388 | 0.29 | -0.4 | |
2,798,509 | + | Shew_2388 | 0.39 | -1.3 | |
2,798,509 | + | Shew_2388 | 0.39 | -0.1 | |
2,798,535 | + | Shew_2388 | 0.41 | -0.5 |
Or see this region's nucleotide sequence