Strain Fitness in Shewanella loihica PV-4 around Shew_2359
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,758,705 | - | Shew_2358 | 0.33 | +0.3 | |
2,758,830 | + | Shew_2358 | 0.42 | +0.7 | |
2,759,026 | - | Shew_2358 | 0.57 | +0.4 | |
2,759,128 | - | Shew_2358 | 0.65 | -1.0 | |
2,759,177 | + | Shew_2358 | 0.69 | -0.0 | |
2,759,728 | + | Shew_2359 | 0.11 | -1.5 | |
2,760,280 | + | -0.0 | |||
2,760,582 | + | Shew_2360 | 0.13 | +1.0 | |
2,760,606 | - | Shew_2360 | 0.14 | +0.6 | |
2,760,651 | + | Shew_2360 | 0.18 | +0.2 | |
2,760,685 | + | Shew_2360 | 0.20 | +0.4 | |
2,760,995 | - | Shew_2360 | 0.43 | +0.2 | |
2,761,155 | + | Shew_2360 | 0.55 | -2.4 | |
2,761,181 | + | Shew_2360 | 0.57 | +1.2 |
Or see this region's nucleotide sequence