Strain Fitness in Shewanella loihica PV-4 around Shew_2332

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2330 and Shew_2331 are separated by 113 nucleotidesShew_2331 and Shew_2332 are separated by 68 nucleotidesShew_2332 and Shew_2333 are separated by 70 nucleotidesShew_2333 and secF are separated by 172 nucleotides Shew_2330: Shew_2330 - carbon starvation protein CstA (RefSeq), at 2,723,735 to 2,725,171 _2330 Shew_2331: Shew_2331 - YaeQ family protein (RefSeq), at 2,725,285 to 2,725,824 _2331 Shew_2332: Shew_2332 - siroheme synthase (RefSeq), at 2,725,893 to 2,726,804 _2332 Shew_2333: Shew_2333 - hypothetical protein (RefSeq), at 2,726,875 to 2,727,192 _2333 Shew_2334: secF - preprotein translocase subunit SecF (RefSeq), at 2,727,365 to 2,728,312 secF Position (kb) 2725 2726 2727Strain fitness (log2 ratio) -1 0 1at 2724.913 kb on + strand, within Shew_2330at 2724.920 kb on + strand, within Shew_2330at 2725.794 kb on - strandat 2726.509 kb on - strand, within Shew_2332at 2727.424 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,724,913 + Shew_2330 0.82 +0.3
2,724,920 + Shew_2330 0.82 +0.7
2,725,794 - +0.8
2,726,509 - Shew_2332 0.68 -0.7
2,727,424 - +0.3

Or see this region's nucleotide sequence