Strain Fitness in Shewanella loihica PV-4 around Shew_2231

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2230 and Shew_2231 are separated by 543 nucleotidesShew_2231 and Shew_2232 are separated by 120 nucleotides Shew_2230: Shew_2230 - adenylate kinase (RefSeq), at 2,606,468 to 2,607,112 _2230 Shew_2231: Shew_2231 - thioredoxin domain-containing protein (RefSeq), at 2,607,656 to 2,608,495 _2231 Shew_2232: Shew_2232 - heat shock protein 90 (RefSeq), at 2,608,616 to 2,610,535 _2232 Position (kb) 2607 2608 2609Strain fitness (log2 ratio) -1 0 1at 2607.993 kb on - strand, within Shew_2231at 2608.178 kb on - strand, within Shew_2231at 2608.398 kb on - strand, within Shew_2231at 2608.403 kb on - strand, within Shew_2231at 2608.511 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,607,993 - Shew_2231 0.40 -0.7
2,608,178 - Shew_2231 0.62 -1.2
2,608,398 - Shew_2231 0.88 +0.3
2,608,403 - Shew_2231 0.89 +0.8
2,608,511 - +0.4

Or see this region's nucleotide sequence