Strain Fitness in Shewanella loihica PV-4 around Shew_2191

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2189 and Shew_2190 are separated by 2 nucleotidesShew_2190 and Shew_2191 are separated by 82 nucleotidesShew_2191 and Shew_2192 are separated by 145 nucleotidesShew_2192 and Shew_2193 are separated by 65 nucleotides Shew_2189: Shew_2189 - alpha/beta hydrolase fold (RefSeq), at 2,548,610 to 2,549,545 _2189 Shew_2190: Shew_2190 - hypothetical protein (RefSeq), at 2,549,548 to 2,550,396 _2190 Shew_2191: Shew_2191 - hypothetical protein (RefSeq), at 2,550,479 to 2,551,180 _2191 Shew_2192: Shew_2192 - hypothetical protein (RefSeq), at 2,551,326 to 2,551,697 _2192 Shew_2193: Shew_2193 - peptidase M22, glycoprotease (RefSeq), at 2,551,763 to 2,552,506 _2193 Position (kb) 2550 2551 2552Strain fitness (log2 ratio) -2 -1 0 1at 2549.516 kb on - strandat 2549.798 kb on - strand, within Shew_2190at 2549.800 kb on + strand, within Shew_2190at 2549.800 kb on + strand, within Shew_2190at 2549.924 kb on - strand, within Shew_2190at 2549.951 kb on - strand, within Shew_2190at 2550.651 kb on + strand, within Shew_2191at 2551.652 kb on + strand, within Shew_2192

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,549,516 - -0.1
2,549,798 - Shew_2190 0.29 -0.4
2,549,800 + Shew_2190 0.30 -0.5
2,549,800 + Shew_2190 0.30 -2.3
2,549,924 - Shew_2190 0.44 +0.2
2,549,951 - Shew_2190 0.47 -0.3
2,550,651 + Shew_2191 0.25 -0.8
2,551,652 + Shew_2192 0.88 +0.2

Or see this region's nucleotide sequence