Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2059 and Shew_R0071 are separated by 125 nucleotides Shew_R0071 and Shew_R0072 are separated by 31 nucleotides Shew_R0072 and Shew_R0073 are separated by 40 nucleotides Shew_R0073 and Shew_2060 are separated by 293 nucleotides Shew_2060 and Shew_2061 are separated by 141 nucleotides Shew_2061 and Shew_2062 are separated by 184 nucleotides
Shew_2059: Shew_2059 - hypothetical protein (RefSeq), at 2,378,163 to 2,378,651
_2059
Shew_R0071: Shew_R0071 - tRNA-Tyr (RefSeq), at 2,378,777 to 2,378,861
_R0071
Shew_R0072: Shew_R0072 - tRNA-Tyr (RefSeq), at 2,378,893 to 2,378,977
_R0072
Shew_R0073: Shew_R0073 - tRNA-Tyr (RefSeq), at 2,379,018 to 2,379,102
_R0073
Shew_2060: Shew_2060 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit (RefSeq), at 2,379,396 to 2,380,457
_2060
Shew_2061: Shew_2061 - radical SAM domain-containing protein (RefSeq), at 2,380,599 to 2,381,267
_2061
Shew_2062: Shew_2062 - exsB protein (RefSeq), at 2,381,452 to 2,382,135
_2062
Position (kb)
2379
2380
2381 Strain fitness (log2 ratio)
-2
-1
0
1 at 2378.499 kb on - strand, within Shew_2059 at 2378.569 kb on - strand, within Shew_2059 at 2379.431 kb on + strand at 2379.908 kb on + strand, within Shew_2060 at 2381.019 kb on + strand, within Shew_2061 at 2381.118 kb on + strand, within Shew_2061 at 2381.331 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,378,499 - Shew_2059 0.69 +0.4 2,378,569 - Shew_2059 0.83 -0.0 2,379,431 + -2.7 2,379,908 + Shew_2060 0.48 -1.6 2,381,019 + Shew_2061 0.63 +1.3 2,381,118 + Shew_2061 0.78 +1.4 2,381,331 - +0.7
Or see this region's nucleotide sequence