Strain Fitness in Shewanella loihica PV-4 around Shew_1960

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1958 and Shew_1959 are separated by 63 nucleotidesShew_1959 and Shew_1960 are separated by 38 nucleotidesShew_1960 and Shew_1961 are separated by 162 nucleotides Shew_1958: Shew_1958 - orotidine 5'-phosphate decarboxylase (RefSeq), at 2,263,263 to 2,263,958 _1958 Shew_1959: Shew_1959 - short chain dehydrogenase (RefSeq), at 2,264,022 to 2,264,837 _1959 Shew_1960: Shew_1960 - hypothetical protein (RefSeq), at 2,264,876 to 2,265,418 _1960 Shew_1961: Shew_1961 - acyl-CoA dehydrogenase domain-containing protein (RefSeq), at 2,265,581 to 2,267,332 _1961 Position (kb) 2264 2265 2266Strain fitness (log2 ratio) -1 0 1 2at 2264.071 kb on + strandat 2264.407 kb on - strand, within Shew_1959at 2264.915 kb on - strandat 2265.246 kb on - strand, within Shew_1960at 2265.783 kb on + strand, within Shew_1961at 2266.095 kb on + strand, within Shew_1961

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,264,071 + +0.2
2,264,407 - Shew_1959 0.47 -0.0
2,264,915 - +0.8
2,265,246 - Shew_1960 0.68 -1.0
2,265,783 + Shew_1961 0.12 +1.8
2,266,095 + Shew_1961 0.29 +1.2

Or see this region's nucleotide sequence