Strain Fitness in Shewanella loihica PV-4 around Shew_1952

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1951 and Shew_1952 are separated by 389 nucleotidesShew_1952 and Shew_1953 are separated by 176 nucleotidesShew_1953 and rpsA are separated by 99 nucleotides Shew_1951: Shew_1951 - aromatic amino acid aminotransferase (RefSeq), at 2,255,769 to 2,256,959 _1951 Shew_1952: Shew_1952 - 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq), at 2,257,349 to 2,258,629 _1952 Shew_1953: Shew_1953 - cytidylate kinase (RefSeq), at 2,258,806 to 2,259,498 _1953 Shew_1954: rpsA - 30S ribosomal protein S1 (RefSeq), at 2,259,598 to 2,261,265 rpsA Position (kb) 2257 2258 2259Strain fitness (log2 ratio) -1 0 1at 2256.523 kb on + strand, within Shew_1951at 2256.986 kb on - strandat 2257.013 kb on - strandat 2257.892 kb on - strand, within Shew_1952at 2258.142 kb on + strand, within Shew_1952at 2258.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,256,523 + Shew_1951 0.63 -1.5
2,256,986 - +0.0
2,257,013 - -0.0
2,257,892 - Shew_1952 0.42 -1.3
2,258,142 + Shew_1952 0.62 +0.4
2,258,550 + -0.2

Or see this region's nucleotide sequence