Strain Fitness in Shewanella loihica PV-4 around Shew_1839

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1837 and Shew_1838 are separated by 90 nucleotidesShew_1838 and Shew_1839 are separated by 130 nucleotidesShew_1839 and Shew_1840 are separated by 14 nucleotidesShew_1840 and Shew_1841 are separated by 72 nucleotides Shew_1837: Shew_1837 - hypothetical protein (RefSeq), at 2,114,231 to 2,115,361 _1837 Shew_1838: Shew_1838 - DNA replication initiation factor (RefSeq), at 2,115,452 to 2,116,162 _1838 Shew_1839: Shew_1839 - hypothetical protein (RefSeq), at 2,116,293 to 2,116,664 _1839 Shew_1840: Shew_1840 - arsenate reductase (RefSeq), at 2,116,679 to 2,117,041 _1840 Shew_1841: Shew_1841 - peptidase M48, Ste24p (RefSeq), at 2,117,114 to 2,118,571 _1841 Position (kb) 2116 2117Strain fitness (log2 ratio) -1 0 1at 2115.446 kb on + strandat 2116.486 kb on + strand, within Shew_1839at 2116.486 kb on + strand, within Shew_1839at 2116.759 kb on + strand, within Shew_1840at 2116.759 kb on + strand, within Shew_1840at 2116.767 kb on - strand, within Shew_1840

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,115,446 + +0.2
2,116,486 + Shew_1839 0.52 +0.0
2,116,486 + Shew_1839 0.52 -1.3
2,116,759 + Shew_1840 0.22 -0.2
2,116,759 + Shew_1840 0.22 +0.5
2,116,767 - Shew_1840 0.24 +0.2

Or see this region's nucleotide sequence