Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1676 and Shew_1677 are separated by 154 nucleotides Shew_1677 and Shew_1678 are separated by 72 nucleotides Shew_1678 and Shew_1679 are separated by 60 nucleotides
Shew_1676: Shew_1676 - ABC transporter-related protein (RefSeq), at 1,926,354 to 1,927,949
_1676
Shew_1677: Shew_1677 - leucyl aminopeptidase (RefSeq), at 1,928,104 to 1,929,465
_1677
Shew_1678: Shew_1678 - hypothetical protein (RefSeq), at 1,929,538 to 1,929,966
_1678
Shew_1679: Shew_1679 - TetR family transcriptional regulator (RefSeq), at 1,930,027 to 1,930,584
_1679
Position (kb) 1928
1929
1930 Strain fitness (log2 ratio) -1
0
1
2 at 1928.230 kb on - strand at 1928.432 kb on + strand, within Shew_1677 at 1928.539 kb on - strand, within Shew_1677 at 1928.843 kb on + strand, within Shew_1677 at 1929.031 kb on - strand, within Shew_1677 at 1929.379 kb on - strand at 1929.379 kb on - strand at 1929.420 kb on + strand at 1929.656 kb on - strand, within Shew_1678 at 1930.090 kb on - strand, within Shew_1679 at 1930.370 kb on + strand, within Shew_1679
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,928,230 - -0.8 1,928,432 + Shew_1677 0.24 +0.4 1,928,539 - Shew_1677 0.32 +0.4 1,928,843 + Shew_1677 0.54 +2.0 1,929,031 - Shew_1677 0.68 +0.5 1,929,379 - +0.6 1,929,379 - +0.4 1,929,420 + +0.1 1,929,656 - Shew_1678 0.28 +0.3 1,930,090 - Shew_1679 0.11 +1.2 1,930,370 + Shew_1679 0.61 -0.1
Or see this region's nucleotide sequence