Strain Fitness in Shewanella loihica PV-4 around Shew_1524

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1522 and Shew_1523 are separated by 158 nucleotidesShew_1523 and Shew_1524 overlap by 11 nucleotidesShew_1524 and Shew_1525 overlap by 1 nucleotidesShew_1525 and Shew_1526 are separated by 3 nucleotides Shew_1522: Shew_1522 - prolyl oligopeptidase (RefSeq), at 1,745,372 to 1,747,462 _1522 Shew_1523: Shew_1523 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 1,747,621 to 1,748,019 _1523 Shew_1524: Shew_1524 - MotA/TolQ/ExbB proton channel (RefSeq), at 1,748,009 to 1,748,698 _1524 Shew_1525: Shew_1525 - biopolymer transport protein ExbD/TolR (RefSeq), at 1,748,698 to 1,749,132 _1525 Shew_1526: Shew_1526 - TolA family protein (RefSeq), at 1,749,136 to 1,750,071 _1526 Position (kb) 1748 1749Strain fitness (log2 ratio) -3 -2 -1 0 1at 1747.124 kb on + strand, within Shew_1522at 1747.747 kb on - strand, within Shew_1523at 1747.860 kb on + strand, within Shew_1523at 1747.930 kb on - strand, within Shew_1523at 1747.951 kb on + strand, within Shew_1523at 1748.296 kb on + strand, within Shew_1524at 1748.437 kb on + strand, within Shew_1524at 1748.437 kb on + strand, within Shew_1524at 1748.950 kb on + strand, within Shew_1525at 1749.245 kb on - strand, within Shew_1526at 1749.551 kb on - strand, within Shew_1526

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,747,124 + Shew_1522 0.84 -0.9
1,747,747 - Shew_1523 0.32 +0.5
1,747,860 + Shew_1523 0.60 +0.3
1,747,930 - Shew_1523 0.77 -2.8
1,747,951 + Shew_1523 0.83 -0.2
1,748,296 + Shew_1524 0.42 -1.4
1,748,437 + Shew_1524 0.62 -1.5
1,748,437 + Shew_1524 0.62 -2.1
1,748,950 + Shew_1525 0.58 -0.8
1,749,245 - Shew_1526 0.12 +0.2
1,749,551 - Shew_1526 0.44 -0.8

Or see this region's nucleotide sequence