Strain Fitness in Shewanella loihica PV-4 around Shew_1438

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1437 and Shew_1438 are separated by 246 nucleotidesShew_1438 and Shew_1439 are separated by 93 nucleotidesShew_1439 and Shew_1440 are separated by 29 nucleotides Shew_1437: Shew_1437 - transcriptional regulator, TyrR (RefSeq), at 1,651,424 to 1,652,968 _1437 Shew_1438: Shew_1438 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 1,653,215 to 1,654,201 _1438 Shew_1439: Shew_1439 - maleylacetoacetate isomerase (RefSeq), at 1,654,295 to 1,654,939 _1439 Shew_1440: Shew_1440 - LysR family transcriptional regulator (RefSeq), at 1,654,969 to 1,655,859 _1440 Position (kb) 1653 1654 1655Strain fitness (log2 ratio) -2 -1 0 1at 1652.700 kb on + strand, within Shew_1437at 1652.708 kb on + strand, within Shew_1437at 1652.853 kb on - strandat 1653.127 kb on + strandat 1653.182 kb on - strandat 1653.182 kb on - strandat 1653.280 kb on + strandat 1653.736 kb on + strand, within Shew_1438at 1654.177 kb on + strandat 1654.629 kb on + strand, within Shew_1439at 1654.659 kb on + strand, within Shew_1439at 1654.667 kb on - strand, within Shew_1439at 1654.784 kb on - strand, within Shew_1439at 1655.074 kb on - strand, within Shew_1440

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,652,700 + Shew_1437 0.83 +0.3
1,652,708 + Shew_1437 0.83 +0.8
1,652,853 - +1.5
1,653,127 + -0.9
1,653,182 - +0.6
1,653,182 - +0.5
1,653,280 + -2.0
1,653,736 + Shew_1438 0.53 -2.4
1,654,177 + -0.0
1,654,629 + Shew_1439 0.52 +0.6
1,654,659 + Shew_1439 0.56 +0.0
1,654,667 - Shew_1439 0.58 +0.4
1,654,784 - Shew_1439 0.76 +0.7
1,655,074 - Shew_1440 0.12 +0.5

Or see this region's nucleotide sequence