Strain Fitness in Shewanella loihica PV-4 around Shew_1369

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliG and Shew_1368 overlap by 1 nucleotidesShew_1368 and fliI overlap by 29 nucleotidesfliI and Shew_1370 are separated by 29 nucleotidesShew_1370 and Shew_1371 are separated by 380 nucleotides Shew_1367: fliG - flagellar motor switch protein G (RefSeq), at 1,576,729 to 1,577,772 fliG Shew_1368: Shew_1368 - flagellar assembly protein FliH (RefSeq), at 1,577,772 to 1,578,791 _1368 Shew_1369: fliI - flagellum-specific ATP synthase (RefSeq), at 1,578,763 to 1,580,103 fliI Shew_1370: Shew_1370 - flagellar export protein FliJ (RefSeq), at 1,580,133 to 1,580,579 _1370 Shew_1371: Shew_1371 - flagellar hook-length control protein (RefSeq), at 1,580,960 to 1,582,666 _1371 Position (kb) 1578 1579 1580 1581Strain fitness (log2 ratio) -2 -1 0 1at 1577.804 kb on + strandat 1577.956 kb on + strand, within Shew_1368at 1577.981 kb on + strand, within Shew_1368at 1578.043 kb on - strand, within Shew_1368at 1578.061 kb on + strand, within Shew_1368at 1578.565 kb on + strand, within Shew_1368at 1578.565 kb on + strand, within Shew_1368at 1578.920 kb on - strand, within fliIat 1579.284 kb on + strand, within fliIat 1579.292 kb on - strand, within fliIat 1579.866 kb on - strand, within fliIat 1580.254 kb on + strand, within Shew_1370at 1580.598 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,577,804 + -0.5
1,577,956 + Shew_1368 0.18 -0.2
1,577,981 + Shew_1368 0.20 -0.9
1,578,043 - Shew_1368 0.27 -0.5
1,578,061 + Shew_1368 0.28 +0.2
1,578,565 + Shew_1368 0.78 -0.5
1,578,565 + Shew_1368 0.78 +0.0
1,578,920 - fliI Shew_1369 0.12 -0.2
1,579,284 + fliI Shew_1369 0.39 -0.2
1,579,292 - fliI Shew_1369 0.39 -1.9
1,579,866 - fliI Shew_1369 0.82 -0.6
1,580,254 + Shew_1370 0.27 -0.5
1,580,598 + +0.1

Or see this region's nucleotide sequence