Strain Fitness in Shewanella loihica PV-4 around Shew_1347

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntflgB and flgC are separated by 2 nucleotidesflgC and flgD are separated by 10 nucleotidesflgD and flgE are separated by 63 nucleotides Shew_1345: flgB - flagellar basal body rod protein FlgB (RefSeq), at 1,554,691 to 1,555,089 flgB Shew_1346: flgC - flagellar basal body rod protein FlgC (RefSeq), at 1,555,092 to 1,555,511 flgC Shew_1347: flgD - flagellar basal body rod modification protein (RefSeq), at 1,555,522 to 1,556,304 flgD Shew_1348: flgE - flagellar hook protein FlgE (RefSeq), at 1,556,368 to 1,557,729 flgE Position (kb) 1555 1556 1557Strain fitness (log2 ratio) -1 0 1at 1555.859 kb on - strand, within flgDat 1555.920 kb on - strand, within flgDat 1556.331 kb on + strandat 1556.525 kb on - strand, within flgEat 1557.249 kb on - strand, within flgE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,555,859 - flgD Shew_1347 0.43 -0.2
1,555,920 - flgD Shew_1347 0.51 -1.0
1,556,331 + +0.9
1,556,525 - flgE Shew_1348 0.12 +0.3
1,557,249 - flgE Shew_1348 0.65 -0.1

Or see this region's nucleotide sequence