Strain Fitness in Shewanella loihica PV-4 around Shew_1288

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1287 and Shew_1288 are separated by 32 nucleotidesShew_1288 and Shew_1289 overlap by 1 nucleotides Shew_1287: Shew_1287 - hypothetical protein (RefSeq), at 1,487,227 to 1,488,348 _1287 Shew_1288: Shew_1288 - type IV pilus biogenesis/stability protein PilW (RefSeq), at 1,488,381 to 1,489,169 _1288 Shew_1289: Shew_1289 - hypothetical protein (RefSeq), at 1,489,169 to 1,490,179 _1289 Position (kb) 1488 1489 1490Strain fitness (log2 ratio) -3 -2 -1 0 1at 1487.532 kb on - strand, within Shew_1287at 1487.575 kb on + strand, within Shew_1287at 1488.145 kb on + strand, within Shew_1287at 1488.474 kb on + strand, within Shew_1288at 1489.069 kb on + strand, within Shew_1288at 1489.156 kb on - strandat 1489.426 kb on + strand, within Shew_1289at 1489.593 kb on + strand, within Shew_1289at 1489.800 kb on - strand, within Shew_1289at 1489.808 kb on - strand, within Shew_1289at 1489.928 kb on - strand, within Shew_1289

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,487,532 - Shew_1287 0.27 +0.4
1,487,575 + Shew_1287 0.31 +0.7
1,488,145 + Shew_1287 0.82 +0.2
1,488,474 + Shew_1288 0.12 -1.3
1,489,069 + Shew_1288 0.87 -0.1
1,489,156 - -2.9
1,489,426 + Shew_1289 0.25 -2.4
1,489,593 + Shew_1289 0.42 -0.1
1,489,800 - Shew_1289 0.62 +0.2
1,489,808 - Shew_1289 0.63 +0.7
1,489,928 - Shew_1289 0.75 +1.0

Or see this region's nucleotide sequence