Strain Fitness in Shewanella loihica PV-4 around Shew_1084

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1082 and Shew_1083 overlap by 4 nucleotidesShew_1083 and Shew_1084 are separated by 120 nucleotidesShew_1084 and Shew_1085 overlap by 4 nucleotides Shew_1082: Shew_1082 - hypothetical protein (RefSeq), at 1,246,769 to 1,247,065 _1082 Shew_1083: Shew_1083 - apurinic endonuclease Apn1 (RefSeq), at 1,247,062 to 1,247,913 _1083 Shew_1084: Shew_1084 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 1,248,034 to 1,250,070 _1084 Shew_1085: Shew_1085 - response regulator receiver protein (RefSeq), at 1,250,067 to 1,251,161 _1085 Position (kb) 1248 1249 1250 1251Strain fitness (log2 ratio) -1 0 1at 1247.053 kb on - strandat 1247.445 kb on + strand, within Shew_1083at 1247.717 kb on + strand, within Shew_1083at 1247.731 kb on - strand, within Shew_1083at 1247.831 kb on + strandat 1248.046 kb on - strandat 1248.169 kb on - strandat 1248.278 kb on + strand, within Shew_1084at 1248.975 kb on + strand, within Shew_1084at 1249.059 kb on + strand, within Shew_1084at 1249.174 kb on - strand, within Shew_1084at 1249.286 kb on - strand, within Shew_1084at 1249.394 kb on - strand, within Shew_1084at 1249.531 kb on + strand, within Shew_1084at 1249.539 kb on - strand, within Shew_1084at 1249.628 kb on - strand, within Shew_1084at 1249.773 kb on + strand, within Shew_1084at 1249.814 kb on - strand, within Shew_1084at 1249.826 kb on + strand, within Shew_1084at 1249.882 kb on - strandat 1249.997 kb on - strandat 1250.604 kb on + strand, within Shew_1085

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,247,053 - +0.4
1,247,445 + Shew_1083 0.45 -0.0
1,247,717 + Shew_1083 0.77 +0.0
1,247,731 - Shew_1083 0.79 -0.0
1,247,831 + +0.7
1,248,046 - +0.1
1,248,169 - +0.2
1,248,278 + Shew_1084 0.12 +0.5
1,248,975 + Shew_1084 0.46 +0.1
1,249,059 + Shew_1084 0.50 +0.1
1,249,174 - Shew_1084 0.56 +0.1
1,249,286 - Shew_1084 0.61 +0.3
1,249,394 - Shew_1084 0.67 +0.5
1,249,531 + Shew_1084 0.73 -0.1
1,249,539 - Shew_1084 0.74 +1.5
1,249,628 - Shew_1084 0.78 +0.5
1,249,773 + Shew_1084 0.85 +0.8
1,249,814 - Shew_1084 0.87 +0.8
1,249,826 + Shew_1084 0.88 +0.3
1,249,882 - +0.4
1,249,997 - +0.4
1,250,604 + Shew_1085 0.49 +0.1

Or see this region's nucleotide sequence