Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1082 and Shew_1083 overlap by 4 nucleotides Shew_1083 and Shew_1084 are separated by 120 nucleotides Shew_1084 and Shew_1085 overlap by 4 nucleotides
Shew_1082: Shew_1082 - hypothetical protein (RefSeq), at 1,246,769 to 1,247,065
_1082
Shew_1083: Shew_1083 - apurinic endonuclease Apn1 (RefSeq), at 1,247,062 to 1,247,913
_1083
Shew_1084: Shew_1084 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 1,248,034 to 1,250,070
_1084
Shew_1085: Shew_1085 - response regulator receiver protein (RefSeq), at 1,250,067 to 1,251,161
_1085
Position (kb)
1248
1249
1250
1251 Strain fitness (log2 ratio)
-1
0
1 at 1247.053 kb on - strand at 1247.445 kb on + strand, within Shew_1083 at 1247.717 kb on + strand, within Shew_1083 at 1247.731 kb on - strand, within Shew_1083 at 1247.831 kb on + strand at 1248.046 kb on - strand at 1248.169 kb on - strand at 1248.278 kb on + strand, within Shew_1084 at 1248.975 kb on + strand, within Shew_1084 at 1249.059 kb on + strand, within Shew_1084 at 1249.174 kb on - strand, within Shew_1084 at 1249.286 kb on - strand, within Shew_1084 at 1249.394 kb on - strand, within Shew_1084 at 1249.531 kb on + strand, within Shew_1084 at 1249.539 kb on - strand, within Shew_1084 at 1249.628 kb on - strand, within Shew_1084 at 1249.773 kb on + strand, within Shew_1084 at 1249.814 kb on - strand, within Shew_1084 at 1249.826 kb on + strand, within Shew_1084 at 1249.882 kb on - strand at 1249.997 kb on - strand at 1250.604 kb on + strand, within Shew_1085
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,247,053 - +0.4 1,247,445 + Shew_1083 0.45 -0.0 1,247,717 + Shew_1083 0.77 +0.0 1,247,731 - Shew_1083 0.79 -0.0 1,247,831 + +0.7 1,248,046 - +0.1 1,248,169 - +0.2 1,248,278 + Shew_1084 0.12 +0.5 1,248,975 + Shew_1084 0.46 +0.1 1,249,059 + Shew_1084 0.50 +0.1 1,249,174 - Shew_1084 0.56 +0.1 1,249,286 - Shew_1084 0.61 +0.3 1,249,394 - Shew_1084 0.67 +0.5 1,249,531 + Shew_1084 0.73 -0.1 1,249,539 - Shew_1084 0.74 +1.5 1,249,628 - Shew_1084 0.78 +0.5 1,249,773 + Shew_1084 0.85 +0.8 1,249,814 - Shew_1084 0.87 +0.8 1,249,826 + Shew_1084 0.88 +0.3 1,249,882 - +0.4 1,249,997 - +0.4 1,250,604 + Shew_1085 0.49 +0.1
Or see this region's nucleotide sequence