Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0932 and Shew_0933 are separated by 39 nucleotides Shew_0933 and Shew_0934 are separated by 115 nucleotides Shew_0934 and Shew_0935 are separated by 379 nucleotides
Shew_0932: Shew_0932 - radical SAM domain-containing protein (RefSeq), at 1,065,921 to 1,067,009
_0932
Shew_0933: Shew_0933 - methyltransferase type 11 (RefSeq), at 1,067,049 to 1,067,720
_0933
Shew_0934: Shew_0934 - TPR repeat-containing protein (RefSeq), at 1,067,836 to 1,068,750
_0934
Shew_0935: Shew_0935 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 1,069,130 to 1,072,729
_0935
Position (kb)
1067
1068
1069 Strain fitness (log2 ratio)
-1
0
1 at 1067.103 kb on + strand at 1067.349 kb on + strand, within Shew_0933 at 1067.349 kb on + strand, within Shew_0933 at 1067.887 kb on - strand at 1067.987 kb on - strand, within Shew_0934 at 1068.174 kb on + strand, within Shew_0934 at 1068.293 kb on + strand, within Shew_0934 at 1068.301 kb on - strand, within Shew_0934 at 1068.574 kb on - strand, within Shew_0934 at 1068.876 kb on - strand at 1068.954 kb on - strand at 1069.015 kb on + strand at 1069.024 kb on + strand at 1069.429 kb on + strand at 1069.606 kb on + strand, within Shew_0935 at 1069.672 kb on - strand, within Shew_0935 at 1069.702 kb on - strand, within Shew_0935
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,067,103 + -0.0 1,067,349 + Shew_0933 0.45 +0.4 1,067,349 + Shew_0933 0.45 +0.4 1,067,887 - +1.0 1,067,987 - Shew_0934 0.17 +0.0 1,068,174 + Shew_0934 0.37 -0.1 1,068,293 + Shew_0934 0.50 -0.6 1,068,301 - Shew_0934 0.51 -0.4 1,068,574 - Shew_0934 0.81 -0.2 1,068,876 - -0.2 1,068,954 - -1.1 1,069,015 + +0.0 1,069,024 + -0.1 1,069,429 + -0.3 1,069,606 + Shew_0935 0.13 +0.3 1,069,672 - Shew_0935 0.15 -0.1 1,069,702 - Shew_0935 0.16 +0.8
Or see this region's nucleotide sequence