Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0888 and Shew_0889 are separated by 267 nucleotides Shew_0889 and Shew_0890 are separated by 1 nucleotides Shew_0890 and Shew_0891 are separated by 114 nucleotides
Shew_0888: Shew_0888 - no description, at 1,008,328 to 1,009,505
_0888
Shew_0889: Shew_0889 - hypothetical protein (RefSeq), at 1,009,773 to 1,010,162
_0889
Shew_0890: Shew_0890 - secretion protein HlyD family protein (RefSeq), at 1,010,164 to 1,011,300
_0890
Shew_0891: Shew_0891 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,011,415 to 1,012,728
_0891
Position (kb)
1010
1011
1012 Strain fitness (log2 ratio)
-1
0
1
2 at 1009.619 kb on - strand at 1009.935 kb on - strand, within Shew_0889 at 1010.060 kb on + strand, within Shew_0889 at 1010.505 kb on + strand, within Shew_0890 at 1010.512 kb on - strand, within Shew_0890 at 1010.547 kb on + strand, within Shew_0890 at 1010.550 kb on - strand, within Shew_0890 at 1010.884 kb on - strand, within Shew_0890 at 1011.123 kb on + strand, within Shew_0890 at 1011.748 kb on + strand, within Shew_0891 at 1012.117 kb on - strand, within Shew_0891 at 1012.117 kb on - strand, within Shew_0891
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,009,619 - +0.2 1,009,935 - Shew_0889 0.42 -0.2 1,010,060 + Shew_0889 0.74 +1.0 1,010,505 + Shew_0890 0.30 +0.2 1,010,512 - Shew_0890 0.31 +0.2 1,010,547 + Shew_0890 0.34 +0.4 1,010,550 - Shew_0890 0.34 -0.1 1,010,884 - Shew_0890 0.63 +0.5 1,011,123 + Shew_0890 0.84 +2.0 1,011,748 + Shew_0891 0.25 +0.7 1,012,117 - Shew_0891 0.53 +0.1 1,012,117 - Shew_0891 0.53 -0.2
Or see this region's nucleotide sequence