Strain Fitness in Shewanella loihica PV-4 around Shew_0792

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0791 and Shew_0792 are separated by 197 nucleotidesShew_0792 and Shew_0793 are separated by 176 nucleotides Shew_0791: Shew_0791 - spermine synthase (RefSeq), at 903,429 to 904,172 _0791 Shew_0792: Shew_0792 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 904,370 to 904,939 _0792 Shew_0793: Shew_0793 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 905,116 to 906,681 _0793 Position (kb) 904 905Strain fitness (log2 ratio) -2 -1 0 1 2at 903.381 kb on - strandat 903.522 kb on - strand, within Shew_0791at 903.526 kb on + strand, within Shew_0791at 903.550 kb on + strand, within Shew_0791at 903.568 kb on - strand, within Shew_0791at 903.669 kb on - strand, within Shew_0791at 903.917 kb on + strand, within Shew_0791at 903.925 kb on - strand, within Shew_0791at 903.925 kb on - strand, within Shew_0791at 903.925 kb on - strand, within Shew_0791at 903.925 kb on - strand, within Shew_0791at 903.925 kb on - strand, within Shew_0791at 904.523 kb on - strand, within Shew_0792at 904.561 kb on + strand, within Shew_0792at 904.569 kb on - strand, within Shew_0792at 904.722 kb on + strand, within Shew_0792at 904.809 kb on + strand, within Shew_0792at 904.809 kb on + strand, within Shew_0792at 904.817 kb on - strand, within Shew_0792at 904.877 kb on + strand, within Shew_0792at 904.878 kb on + strand, within Shew_0792at 904.892 kb on + strandat 904.892 kb on + strandat 905.437 kb on + strand, within Shew_0793at 905.512 kb on - strand, within Shew_0793at 905.622 kb on + strand, within Shew_0793at 905.664 kb on + strand, within Shew_0793at 905.849 kb on - strand, within Shew_0793

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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903,381 - -0.6
903,522 - Shew_0791 0.12 +0.2
903,526 + Shew_0791 0.13 -0.1
903,550 + Shew_0791 0.16 -0.5
903,568 - Shew_0791 0.19 -0.4
903,669 - Shew_0791 0.32 +1.8
903,917 + Shew_0791 0.66 +0.8
903,925 - Shew_0791 0.67 -2.1
903,925 - Shew_0791 0.67 +0.1
903,925 - Shew_0791 0.67 +0.7
903,925 - Shew_0791 0.67 +0.3
903,925 - Shew_0791 0.67 +0.2
904,523 - Shew_0792 0.27 -1.7
904,561 + Shew_0792 0.34 -1.4
904,569 - Shew_0792 0.35 -1.7
904,722 + Shew_0792 0.62 -0.7
904,809 + Shew_0792 0.77 -0.8
904,809 + Shew_0792 0.77 -1.4
904,817 - Shew_0792 0.78 -0.9
904,877 + Shew_0792 0.89 -2.1
904,878 + Shew_0792 0.89 -1.1
904,892 + -0.8
904,892 + +0.4
905,437 + Shew_0793 0.20 -0.3
905,512 - Shew_0793 0.25 -0.9
905,622 + Shew_0793 0.32 +0.0
905,664 + Shew_0793 0.35 -0.7
905,849 - Shew_0793 0.47 -0.3

Or see this region's nucleotide sequence