Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0785 and Shew_0786 overlap by 26 nucleotides Shew_0786 and Shew_0787 are separated by 218 nucleotides Shew_0787 and Shew_0788 are separated by 114 nucleotides Shew_0788 and Shew_0789 are separated by 89 nucleotides
Shew_0785: Shew_0785 - methyltransferase type 12 (RefSeq), at 898,474 to 899,004
_0785
Shew_0786: Shew_0786 - hypothetical protein (RefSeq), at 898,979 to 899,395
_0786
Shew_0787: Shew_0787 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 899,614 to 900,603
_0787
Shew_0788: Shew_0788 - dienelactone hydrolase (RefSeq), at 900,718 to 901,455
_0788
Shew_0789: Shew_0789 - Mg2+ transporter protein, CorA family protein (RefSeq), at 901,545 to 902,513
_0789
Position (kb) 899
900
901 Strain fitness (log2 ratio) -1
0
1 at 899.095 kb on + strand, within Shew_0786 at 899.270 kb on - strand, within Shew_0786 at 900.148 kb on - strand, within Shew_0787 at 900.300 kb on + strand, within Shew_0787 at 900.380 kb on + strand, within Shew_0787 at 900.388 kb on - strand, within Shew_0787 at 900.552 kb on - strand at 900.948 kb on - strand, within Shew_0788 at 900.948 kb on - strand, within Shew_0788 at 901.183 kb on + strand, within Shew_0788 at 901.457 kb on - strand at 901.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 899,095 + Shew_0786 0.28 +0.2 899,270 - Shew_0786 0.70 -0.3 900,148 - Shew_0787 0.54 +1.1 900,300 + Shew_0787 0.69 -0.1 900,380 + Shew_0787 0.77 +0.0 900,388 - Shew_0787 0.78 +0.5 900,552 - +0.1 900,948 - Shew_0788 0.31 +1.0 900,948 - Shew_0788 0.31 +0.0 901,183 + Shew_0788 0.63 +1.5 901,457 - +0.2 901,500 - -0.6
Or see this region's nucleotide sequence