Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0507 and Shew_0508 are separated by 73 nucleotides Shew_0508 and Shew_0509 are separated by 265 nucleotides Shew_0509 and Shew_0510 are separated by 52 nucleotides
Shew_0507: Shew_0507 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 565,616 to 566,707
_0507
Shew_0508: Shew_0508 - xanthine/uracil/vitamin C permease (RefSeq), at 566,781 to 567,938
_0508
Shew_0509: Shew_0509 - hypothetical protein (RefSeq), at 568,204 to 568,629
_0509
Shew_0510: Shew_0510 - putative outer membrane adhesin like proteiin (RefSeq), at 568,682 to 577,120
_0510
Position (kb) 566
567
568 Strain fitness (log2 ratio) -1
0
1 at 565.830 kb on + strand, within Shew_0507 at 565.909 kb on + strand, within Shew_0507 at 565.917 kb on - strand, within Shew_0507 at 566.090 kb on + strand, within Shew_0507 at 566.103 kb on - strand, within Shew_0507 at 566.344 kb on - strand, within Shew_0507 at 566.613 kb on - strand at 567.025 kb on + strand, within Shew_0508 at 567.025 kb on + strand, within Shew_0508 at 567.033 kb on - strand, within Shew_0508 at 567.033 kb on - strand, within Shew_0508 at 567.044 kb on + strand, within Shew_0508 at 567.065 kb on + strand, within Shew_0508 at 567.073 kb on - strand, within Shew_0508 at 567.073 kb on - strand, within Shew_0508 at 567.397 kb on + strand, within Shew_0508 at 567.595 kb on - strand, within Shew_0508 at 567.665 kb on - strand, within Shew_0508 at 567.680 kb on - strand, within Shew_0508 at 567.774 kb on - strand, within Shew_0508 at 568.067 kb on + strand at 568.440 kb on - strand, within Shew_0509 at 568.442 kb on + strand, within Shew_0509 at 568.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 565,830 + Shew_0507 0.20 +1.7 565,909 + Shew_0507 0.27 +0.2 565,917 - Shew_0507 0.28 +0.5 566,090 + Shew_0507 0.43 +0.6 566,103 - Shew_0507 0.45 -0.0 566,344 - Shew_0507 0.67 +1.2 566,613 - +0.0 567,025 + Shew_0508 0.21 +1.2 567,025 + Shew_0508 0.21 +0.1 567,033 - Shew_0508 0.22 +1.0 567,033 - Shew_0508 0.22 +0.7 567,044 + Shew_0508 0.23 -0.4 567,065 + Shew_0508 0.25 +0.4 567,073 - Shew_0508 0.25 +0.8 567,073 - Shew_0508 0.25 +0.3 567,397 + Shew_0508 0.53 -0.4 567,595 - Shew_0508 0.70 +0.1 567,665 - Shew_0508 0.76 +0.3 567,680 - Shew_0508 0.78 +1.1 567,774 - Shew_0508 0.86 +1.5 568,067 + -0.1 568,440 - Shew_0509 0.55 -0.4 568,442 + Shew_0509 0.56 +0.3 568,871 - +0.4
Or see this region's nucleotide sequence