Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0479 and Shew_0480 are separated by 69 nucleotides Shew_0480 and Shew_0481 are separated by 134 nucleotides Shew_0481 and Shew_0482 are separated by 289 nucleotides
Shew_0479: Shew_0479 - HipA domain-containing protein (RefSeq), at 536,139 to 537,440
_0479
Shew_0480: Shew_0480 - Sel1 domain-containing protein (RefSeq), at 537,510 to 538,568
_0480
Shew_0481: Shew_0481 - hypothetical protein (RefSeq), at 538,703 to 539,107
_0481
Shew_0482: Shew_0482 - hypothetical protein (RefSeq), at 539,397 to 540,563
_0482
Position (kb) 537
538
539 Strain fitness (log2 ratio) -1
0
1 at 536.672 kb on - strand, within Shew_0479 at 536.785 kb on - strand, within Shew_0479 at 536.785 kb on - strand, within Shew_0479 at 536.785 kb on - strand, within Shew_0479 at 536.785 kb on - strand, within Shew_0479 at 536.943 kb on + strand, within Shew_0479 at 537.104 kb on + strand, within Shew_0479 at 537.434 kb on + strand at 537.443 kb on - strand at 537.961 kb on - strand, within Shew_0480 at 538.003 kb on + strand, within Shew_0480 at 538.497 kb on - strand at 538.548 kb on + strand at 538.563 kb on + strand at 538.563 kb on + strand at 538.812 kb on + strand, within Shew_0481 at 538.898 kb on - strand, within Shew_0481 at 538.902 kb on - strand, within Shew_0481 at 538.948 kb on + strand, within Shew_0481 at 539.021 kb on + strand, within Shew_0481 at 539.077 kb on - strand at 539.105 kb on - strand at 539.190 kb on - strand at 539.192 kb on + strand at 539.200 kb on - strand at 539.320 kb on - strand at 539.551 kb on - strand, within Shew_0482 at 539.553 kb on + strand, within Shew_0482
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 536,672 - Shew_0479 0.41 +0.3 536,785 - Shew_0479 0.50 +0.8 536,785 - Shew_0479 0.50 +0.0 536,785 - Shew_0479 0.50 +0.3 536,785 - Shew_0479 0.50 -0.3 536,943 + Shew_0479 0.62 -0.2 537,104 + Shew_0479 0.74 +0.2 537,434 + +0.0 537,443 - +0.2 537,961 - Shew_0480 0.43 -0.2 538,003 + Shew_0480 0.47 -0.7 538,497 - +0.3 538,548 + -0.1 538,563 + -0.2 538,563 + +0.2 538,812 + Shew_0481 0.27 +0.3 538,898 - Shew_0481 0.48 +0.4 538,902 - Shew_0481 0.49 +0.6 538,948 + Shew_0481 0.60 +0.1 539,021 + Shew_0481 0.79 +1.6 539,077 - +0.9 539,105 - +0.2 539,190 - +0.0 539,192 + +0.4 539,200 - +0.3 539,320 - +0.4 539,551 - Shew_0482 0.13 +0.0 539,553 + Shew_0482 0.13 -0.1
Or see this region's nucleotide sequence