Strain Fitness in Shewanella loihica PV-4 around Shew_0470

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0468 and Shew_0469 are separated by 2 nucleotidesShew_0469 and Shew_0470 are separated by 16 nucleotidesShew_0470 and groES are separated by 227 nucleotidesgroES and groEL are separated by 56 nucleotides Shew_0468: Shew_0468 - LysR family transcriptional regulator (RefSeq), at 525,876 to 526,820 _0468 Shew_0469: Shew_0469 - pentapeptide repeat-containing protein (RefSeq), at 526,823 to 527,494 _0469 Shew_0470: Shew_0470 - MATE efflux family protein (RefSeq), at 527,511 to 528,878 _0470 Shew_0471: groES - co-chaperonin GroES (RefSeq), at 529,106 to 529,396 groES Shew_0472: groEL - chaperonin GroEL (RefSeq), at 529,453 to 531,102 groEL Position (kb) 527 528 529Strain fitness (log2 ratio) -2 -1 0 1at 526.549 kb on + strand, within Shew_0468at 526.557 kb on - strand, within Shew_0468at 527.035 kb on + strand, within Shew_0469at 527.573 kb on + strandat 527.763 kb on + strand, within Shew_0470at 528.478 kb on - strand, within Shew_0470at 528.979 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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526,549 + Shew_0468 0.71 +0.2
526,557 - Shew_0468 0.72 +1.4
527,035 + Shew_0469 0.32 -1.3
527,573 + -2.5
527,763 + Shew_0470 0.18 -1.2
528,478 - Shew_0470 0.71 -1.8
528,979 + +0.2

Or see this region's nucleotide sequence