Strain Fitness in Shewanella loihica PV-4 around Shew_0469

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0468 and Shew_0469 are separated by 2 nucleotidesShew_0469 and Shew_0470 are separated by 16 nucleotides Shew_0468: Shew_0468 - LysR family transcriptional regulator (RefSeq), at 525,876 to 526,820 _0468 Shew_0469: Shew_0469 - pentapeptide repeat-containing protein (RefSeq), at 526,823 to 527,494 _0469 Shew_0470: Shew_0470 - MATE efflux family protein (RefSeq), at 527,511 to 528,878 _0470 Position (kb) 526 527 528Strain fitness (log2 ratio) -2 -1 0 1at 525.897 kb on - strandat 525.907 kb on - strandat 526.044 kb on - strand, within Shew_0468at 526.106 kb on + strand, within Shew_0468at 526.192 kb on - strand, within Shew_0468at 526.549 kb on + strand, within Shew_0468at 526.557 kb on - strand, within Shew_0468at 527.035 kb on + strand, within Shew_0469at 527.573 kb on + strandat 527.763 kb on + strand, within Shew_0470at 528.478 kb on - strand, within Shew_0470

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
525,897 - -1.2
525,907 - +0.3
526,044 - Shew_0468 0.18 +0.1
526,106 + Shew_0468 0.24 +0.0
526,192 - Shew_0468 0.33 +0.3
526,549 + Shew_0468 0.71 +0.2
526,557 - Shew_0468 0.72 +1.4
527,035 + Shew_0469 0.32 -1.3
527,573 + -2.5
527,763 + Shew_0470 0.18 -1.2
528,478 - Shew_0470 0.71 -1.8

Or see this region's nucleotide sequence