Strain Fitness in Shewanella loihica PV-4 around Shew_0214

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0212 and Shew_0213 are separated by 215 nucleotidesShew_0213 and Shew_0214 are separated by 15 nucleotidesShew_0214 and Shew_0215 are separated by 16 nucleotides Shew_0212: Shew_0212 - type IV pilus secretin PilQ (RefSeq), at 226,517 to 228,568 _0212 Shew_0213: Shew_0213 - shikimate kinase I (RefSeq), at 228,784 to 229,299 _0213 Shew_0214: Shew_0214 - 3-dehydroquinate synthase (RefSeq), at 229,315 to 230,391 _0214 Shew_0215: Shew_0215 - sporulation domain-containing protein (RefSeq), at 230,408 to 231,943 _0215 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1at 228.315 kb on - strand, within Shew_0212at 228.329 kb on - strand, within Shew_0212at 228.366 kb on + strandat 228.381 kb on - strandat 228.552 kb on + strandat 229.593 kb on - strand, within Shew_0214at 229.767 kb on + strand, within Shew_0214at 229.775 kb on - strand, within Shew_0214at 229.827 kb on - strand, within Shew_0214at 229.915 kb on - strand, within Shew_0214at 229.991 kb on - strand, within Shew_0214at 230.060 kb on - strand, within Shew_0214at 230.522 kb on + strandat 230.579 kb on - strand, within Shew_0215at 230.721 kb on + strand, within Shew_0215at 230.769 kb on - strand, within Shew_0215at 230.791 kb on + strand, within Shew_0215at 230.937 kb on - strand, within Shew_0215at 231.046 kb on - strand, within Shew_0215at 231.287 kb on - strand, within Shew_0215

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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228,315 - Shew_0212 0.88 +0.6
228,329 - Shew_0212 0.88 +0.8
228,366 + +0.3
228,381 - +0.2
228,552 + -0.0
229,593 - Shew_0214 0.26 -1.4
229,767 + Shew_0214 0.42 -0.2
229,775 - Shew_0214 0.43 -0.8
229,827 - Shew_0214 0.48 -1.8
229,915 - Shew_0214 0.56 +0.2
229,991 - Shew_0214 0.63 -0.6
230,060 - Shew_0214 0.69 +0.1
230,522 + +0.8
230,579 - Shew_0215 0.11 +0.1
230,721 + Shew_0215 0.20 +0.5
230,769 - Shew_0215 0.24 +0.1
230,791 + Shew_0215 0.25 +0.4
230,937 - Shew_0215 0.34 -0.8
231,046 - Shew_0215 0.42 +0.1
231,287 - Shew_0215 0.57 +0.4

Or see this region's nucleotide sequence