Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_899

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_898 and Pf1N1B4_899 are separated by 326 nucleotidesPf1N1B4_899 and Pf1N1B4_900 are separated by 8 nucleotidesPf1N1B4_900 and Pf1N1B4_901 are separated by 129 nucleotidesPf1N1B4_901 and Pf1N1B4_902 overlap by 24 nucleotides Pf1N1B4_898 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 1,024,769 to 1,026,259 _898 Pf1N1B4_899 - DNA polymerase III chi subunit (EC 2.7.7.7), at 1,026,586 to 1,027,014 _899 Pf1N1B4_900 - FIG00957284: hypothetical protein, at 1,027,023 to 1,027,412 _900 Pf1N1B4_901 - hypothetical protein, at 1,027,542 to 1,027,658 _901 Pf1N1B4_902 - Valyl-tRNA synthetase (EC 6.1.1.9), at 1,027,635 to 1,030,481 _902 Position (kb) 1026 1027 1028Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1025.630 kb on + strandat 1025.630 kb on + strand, within Pf1N1B4_898at 1025.630 kb on + strand, within Pf1N1B4_898at 1025.630 kb on + strand, within Pf1N1B4_898at 1025.630 kb on + strand, within Pf1N1B4_898at 1025.630 kb on + strand, within Pf1N1B4_898at 1025.631 kb on - strand, within Pf1N1B4_898at 1025.631 kb on - strand, within Pf1N1B4_898at 1025.849 kb on + strand, within Pf1N1B4_898at 1025.849 kb on + strand, within Pf1N1B4_898at 1025.849 kb on + strand, within Pf1N1B4_898at 1026.033 kb on - strand, within Pf1N1B4_898at 1026.033 kb on - strand, within Pf1N1B4_898at 1026.033 kb on - strand, within Pf1N1B4_898at 1026.233 kb on + strandat 1026.234 kb on - strandat 1026.234 kb on - strandat 1026.286 kb on + strandat 1026.286 kb on + strandat 1026.286 kb on + strandat 1026.286 kb on + strandat 1026.286 kb on + strandat 1026.496 kb on - strandat 1026.520 kb on + strandat 1026.520 kb on + strandat 1026.520 kb on + strandat 1026.521 kb on - strandat 1026.604 kb on + strandat 1026.604 kb on + strandat 1026.604 kb on + strandat 1026.604 kb on + strandat 1026.604 kb on + strandat 1026.604 kb on + strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.607 kb on - strandat 1026.691 kb on + strand, within Pf1N1B4_899at 1026.691 kb on + strand, within Pf1N1B4_899at 1026.702 kb on + strandat 1026.879 kb on - strand, within Pf1N1B4_899at 1027.001 kb on + strandat 1027.405 kb on - strandat 1027.410 kb on + strandat 1027.410 kb on + strandat 1027.411 kb on - strandat 1027.411 kb on - strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.459 kb on + strandat 1027.459 kb on + strandat 1027.472 kb on + strandat 1027.586 kb on + strand, within Pf1N1B4_901at 1027.588 kb on + strand, within Pf1N1B4_901at 1027.588 kb on + strand, within Pf1N1B4_901at 1027.588 kb on + strand, within Pf1N1B4_901

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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1,025,630 + +0.1
1,025,630 + Pf1N1B4_898 0.58 -0.2
1,025,630 + Pf1N1B4_898 0.58 +2.6
1,025,630 + Pf1N1B4_898 0.58 +0.5
1,025,630 + Pf1N1B4_898 0.58 -1.9
1,025,630 + Pf1N1B4_898 0.58 +0.1
1,025,631 - Pf1N1B4_898 0.58 -0.7
1,025,631 - Pf1N1B4_898 0.58 -1.7
1,025,849 + Pf1N1B4_898 0.72 +0.4
1,025,849 + Pf1N1B4_898 0.72 +0.6
1,025,849 + Pf1N1B4_898 0.72 +0.4
1,026,033 - Pf1N1B4_898 0.85 -0.5
1,026,033 - Pf1N1B4_898 0.85 +0.8
1,026,033 - Pf1N1B4_898 0.85 -0.7
1,026,233 + -0.9
1,026,234 - -0.1
1,026,234 - +0.1
1,026,286 + -1.3
1,026,286 + -1.9
1,026,286 + +0.7
1,026,286 + -1.1
1,026,286 + -1.1
1,026,496 - -1.5
1,026,520 + -1.5
1,026,520 + +0.9
1,026,520 + +0.1
1,026,521 - -2.1
1,026,604 + -1.9
1,026,604 + -0.3
1,026,604 + -0.9
1,026,604 + +1.1
1,026,604 + -0.4
1,026,604 + +1.1
1,026,605 - -0.9
1,026,605 - -0.3
1,026,605 - -2.9
1,026,605 - +0.1
1,026,605 - +0.1
1,026,605 - -0.7
1,026,605 - +0.1
1,026,605 - +0.4
1,026,605 - +0.7
1,026,605 - +0.3
1,026,605 - +0.8
1,026,605 - -1.3
1,026,607 - -0.3
1,026,691 + Pf1N1B4_899 0.24 +0.7
1,026,691 + Pf1N1B4_899 0.24 +0.5
1,026,702 + -1.5
1,026,879 - Pf1N1B4_899 0.68 -0.9
1,027,001 + +2.7
1,027,405 - +0.5
1,027,410 + +1.1
1,027,410 + +1.1
1,027,411 - +0.8
1,027,411 - -0.3
1,027,425 + +0.7
1,027,425 + +1.7
1,027,425 + +1.7
1,027,425 + -1.5
1,027,425 + +0.1
1,027,425 + +0.1
1,027,425 + +0.7
1,027,425 + -0.5
1,027,426 - -0.9
1,027,426 - +1.1
1,027,426 - -0.1
1,027,426 - -0.5
1,027,426 - +1.9
1,027,426 - +1.1
1,027,426 - +1.7
1,027,426 - -0.9
1,027,426 - +0.7
1,027,426 - +1.9
1,027,459 + +0.3
1,027,459 + -1.9
1,027,472 + -1.3
1,027,586 + Pf1N1B4_901 0.38 +0.7
1,027,588 + Pf1N1B4_901 0.39 +0.2
1,027,588 + Pf1N1B4_901 0.39 -0.8
1,027,588 + Pf1N1B4_901 0.39 -1.5

Or see this region's nucleotide sequence