Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5842 and Pf1N1B4_5843 are separated by 11 nucleotides Pf1N1B4_5843 and Pf1N1B4_5844 are separated by 164 nucleotides Pf1N1B4_5844 and Pf1N1B4_5845 are separated by 322 nucleotides
Pf1N1B4_5842 - Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase), at 277,098 to 277,685
_5842
Pf1N1B4_5843 - phospholipase/carboxylesterase family protein, at 277,697 to 278,413
_5843
Pf1N1B4_5844 - Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein, at 278,578 to 279,357
_5844
Pf1N1B4_5845 - GMP synthase - Glutamine amidotransferase domain, at 279,680 to 280,321
_5845
Position (kb) 278
279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 277.683 kb on + strand at 277.683 kb on + strand at 277.684 kb on - strand at 278.034 kb on - strand, within Pf1N1B4_5843 at 278.056 kb on - strand, within Pf1N1B4_5843 at 278.205 kb on + strand, within Pf1N1B4_5843 at 278.205 kb on + strand, within Pf1N1B4_5843 at 278.205 kb on + strand, within Pf1N1B4_5843 at 278.205 kb on + strand, within Pf1N1B4_5843 at 278.206 kb on - strand, within Pf1N1B4_5843 at 278.211 kb on + strand, within Pf1N1B4_5843 at 278.325 kb on + strand at 278.413 kb on + strand at 278.413 kb on + strand at 278.413 kb on + strand at 278.413 kb on + strand at 278.413 kb on + strand at 278.413 kb on + strand at 278.413 kb on + strand at 278.414 kb on - strand at 278.453 kb on + strand at 278.521 kb on + strand at 278.521 kb on + strand at 278.521 kb on + strand at 278.521 kb on + strand at 278.521 kb on + strand at 278.570 kb on - strand at 278.577 kb on - strand at 278.577 kb on - strand at 278.579 kb on + strand at 278.580 kb on - strand at 278.606 kb on + strand at 278.606 kb on + strand at 278.607 kb on - strand at 278.607 kb on - strand at 278.627 kb on + strand at 278.628 kb on - strand at 278.726 kb on + strand, within Pf1N1B4_5844 at 278.726 kb on + strand at 278.726 kb on + strand, within Pf1N1B4_5844 at 278.727 kb on - strand, within Pf1N1B4_5844 at 278.741 kb on + strand, within Pf1N1B4_5844 at 278.742 kb on - strand, within Pf1N1B4_5844 at 278.742 kb on - strand, within Pf1N1B4_5844 at 278.742 kb on - strand, within Pf1N1B4_5844 at 278.753 kb on - strand, within Pf1N1B4_5844 at 279.033 kb on - strand, within Pf1N1B4_5844 at 279.033 kb on - strand at 279.033 kb on - strand, within Pf1N1B4_5844 at 279.035 kb on + strand at 279.035 kb on + strand at 279.035 kb on + strand, within Pf1N1B4_5844 at 279.036 kb on - strand, within Pf1N1B4_5844 at 279.359 kb on + strand at 279.359 kb on + strand at 279.360 kb on - strand at 279.360 kb on - strand at 279.362 kb on - strand at 279.362 kb on - strand at 279.483 kb on + strand at 279.483 kb on + strand at 279.484 kb on - strand at 279.484 kb on - strand at 279.487 kb on + strand at 279.489 kb on + strand at 279.516 kb on - strand at 279.840 kb on - strand, within Pf1N1B4_5845
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 277,683 + -1.4 277,683 + -0.2 277,684 - +0.5 278,034 - Pf1N1B4_5843 0.47 +0.2 278,056 - Pf1N1B4_5843 0.50 +0.2 278,205 + Pf1N1B4_5843 0.71 +0.3 278,205 + Pf1N1B4_5843 0.71 -0.4 278,205 + Pf1N1B4_5843 0.71 -0.4 278,205 + Pf1N1B4_5843 0.71 -1.5 278,206 - Pf1N1B4_5843 0.71 -0.8 278,211 + Pf1N1B4_5843 0.72 -0.0 278,325 + +0.9 278,413 + -0.1 278,413 + +1.2 278,413 + +0.6 278,413 + -1.2 278,413 + +0.4 278,413 + +0.5 278,413 + +0.7 278,414 - -0.4 278,453 + -1.6 278,521 + -1.2 278,521 + +0.2 278,521 + -0.5 278,521 + -0.7 278,521 + +0.0 278,570 - +0.3 278,577 - -2.4 278,577 - +2.2 278,579 + +1.9 278,580 - -1.4 278,606 + -0.4 278,606 + -1.8 278,607 - -1.4 278,607 - -0.8 278,627 + +1.7 278,628 - +0.7 278,726 + Pf1N1B4_5844 0.19 +0.6 278,726 + +1.2 278,726 + Pf1N1B4_5844 0.19 +0.7 278,727 - Pf1N1B4_5844 0.19 -3.0 278,741 + Pf1N1B4_5844 0.21 -2.8 278,742 - Pf1N1B4_5844 0.21 -0.4 278,742 - Pf1N1B4_5844 0.21 +0.0 278,742 - Pf1N1B4_5844 0.21 -0.8 278,753 - Pf1N1B4_5844 0.22 -0.4 279,033 - Pf1N1B4_5844 0.58 -0.4 279,033 - +1.2 279,033 - Pf1N1B4_5844 0.58 +1.6 279,035 + -0.8 279,035 + -2.0 279,035 + Pf1N1B4_5844 0.59 -0.7 279,036 - Pf1N1B4_5844 0.59 +1.9 279,359 + +0.9 279,359 + -1.0 279,360 - +1.0 279,360 - -1.7 279,362 - -1.3 279,362 - -0.4 279,483 + +2.6 279,483 + -0.3 279,484 - +0.4 279,484 - -0.0 279,487 + -0.2 279,489 + +0.5 279,516 - +1.4 279,840 - Pf1N1B4_5845 0.25 +1.2
Or see this region's nucleotide sequence